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CHECK report for RNASeqRData on riesling1

This page was generated on 2021-01-14 15:59:11 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RNASeqRData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 301/385HostnameOS / ArchINSTALLBUILDCHECK
RNASeqRData 1.9.0
Kuan-Hao Chao
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/RNASeqRData
Branch: master
Last Commit: 7b0e32d
Last Changed Date: 2020-10-27 10:28:03 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: RNASeqRData
Version: 1.9.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RNASeqRData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RNASeqRData_1.9.0.tar.gz
StartedAt: 2021-01-14 11:37:29 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:37:42 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 12.5 seconds
RetCode: 0
Status:  OK  
CheckDir: RNASeqRData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RNASeqRData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RNASeqRData_1.9.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/RNASeqRData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNASeqRData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RNASeqRData' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RNASeqRData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 69.3Mb
  sub-directories of 1Mb or more:
    extdata  68.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/RNASeqRData.Rcheck/00check.log'
for details.



Installation output

RNASeqRData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RNASeqRData_1.9.0.tar.gz && rm -rf RNASeqRData.buildbin-libdir && mkdir RNASeqRData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNASeqRData.buildbin-libdir RNASeqRData_1.9.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RNASeqRData_1.9.0.zip && rm RNASeqRData_1.9.0.tar.gz RNASeqRData_1.9.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 66.3M    0  244k    0     0   248k      0  0:04:33 --:--:--  0:04:33  248k
 14 66.3M   14 9990k    0     0  5781k      0  0:00:11  0:00:01  0:00:10 5778k
 71 66.3M   71 47.1M    0     0  13.9M      0  0:00:04  0:00:03  0:00:01 13.9M
 80 66.3M   80 53.4M    0     0  13.0M      0  0:00:05  0:00:04  0:00:01 13.0M
 87 66.3M   87 58.3M    0     0  12.4M      0  0:00:05  0:00:04  0:00:01 12.4M
100 66.3M  100 66.3M    0     0  13.2M      0  0:00:04  0:00:04 --:--:-- 16.5M

install for i386

* installing *source* package 'RNASeqRData' ...
** using staged installation
** inst
** help
No man pages found in package  'RNASeqRData' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RNASeqRData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RNASeqRData' as RNASeqRData_1.9.0.zip
* DONE (RNASeqRData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RNASeqRData' successfully unpacked and MD5 sums checked

Tests output


Example timings