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CHECK report for RITANdata on riesling1

This page was generated on 2021-01-18 15:58:50 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE RITANdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 296/385HostnameOS / ArchINSTALLBUILDCHECK
RITANdata 1.15.0
Michael Zimmermann
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/RITANdata
Branch: master
Last Commit: df319fe
Last Changed Date: 2020-10-27 10:23:00 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: RITANdata
Version: 1.15.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RITANdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RITANdata_1.15.0.tar.gz
StartedAt: 2021-01-18 11:41:31 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:41:55 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 23.9 seconds
RetCode: 0
Status:  OK  
CheckDir: RITANdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RITANdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings RITANdata_1.15.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/RITANdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RITANdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RITANdata' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RITANdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.5Mb
  sub-directories of 1Mb or more:
    data  12.4Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/RITANdata.Rcheck/00check.log'
for details.



Installation output

RITANdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/RITANdata_1.15.0.tar.gz && rm -rf RITANdata.buildbin-libdir && mkdir RITANdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RITANdata.buildbin-libdir RITANdata_1.15.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL RITANdata_1.15.0.zip && rm RITANdata_1.15.0.tar.gz RITANdata_1.15.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 7603k    4  307k    0     0   229k      0  0:00:33  0:00:01  0:00:32  229k
  9 7603k    9  722k    0     0   388k      0  0:00:19  0:00:01  0:00:18  388k
 22 7603k   22 1687k    0     0   537k      0  0:00:14  0:00:03  0:00:11  537k
 57 7603k   57 4408k    0     0  1139k      0  0:00:06  0:00:03  0:00:03 1139k
100 7603k  100 7603k    0     0  1948k      0  0:00:03  0:00:03 --:--:-- 1947k

install for i386

* installing *source* package 'RITANdata' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RITANdata'
    finding HTML links ... done
    RITANdata-package                       html  
REDIRECT:topic	 RITANdata-package -> RITANdata-package.html [ SUCCESS ]
REDIRECT:topic	 RITANdata -> RITANdata-package.html [ SUCCESS ]
    cached_coding_genes                     html  
REDIRECT:topic	 cached_coding_genes -> cached_coding_genes.html [ SUCCESS ]
    geneset_list                            html  
REDIRECT:topic	 geneset_list -> geneset_list.html [ SUCCESS ]
    network_list                            html  
REDIRECT:topic	 network_list -> network_list.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RITANdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RITANdata' as RITANdata_1.15.0.zip
* DONE (RITANdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'RITANdata' successfully unpacked and MD5 sums checked

Tests output


Example timings

RITANdata.Rcheck/examples_i386/RITANdata-Ex.timings

nameusersystemelapsed
cached_coding_genes000
geneset_list0.340.020.36
network_list0.300.030.33

RITANdata.Rcheck/examples_x64/RITANdata-Ex.timings

nameusersystemelapsed
cached_coding_genes0.010.000.01
geneset_list0.330.030.36
network_list0.300.060.36