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CHECK report for PtH2O2lipids on riesling1

This page was generated on 2021-01-21 16:01:35 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE PtH2O2lipids PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 278/386HostnameOS / ArchINSTALLBUILDCHECK
PtH2O2lipids 1.17.0
James Collins
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/PtH2O2lipids
Branch: master
Last Commit: 4f4a24b
Last Changed Date: 2020-10-27 10:21:27 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: PtH2O2lipids
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PtH2O2lipids.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PtH2O2lipids_1.17.0.tar.gz
StartedAt: 2021-01-21 11:40:51 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:44:50 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 238.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: PtH2O2lipids.Rcheck
Warnings: 2

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PtH2O2lipids.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PtH2O2lipids_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/PtH2O2lipids.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PtH2O2lipids/DESCRIPTION' ... OK
* this is package 'PtH2O2lipids' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PtH2O2lipids' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: Previous alias or file overwritten by alias: ptH2O2lipids
  Rd warning: D:/biocbuild/bbs-3.13-data-experiment/tmpdir/RtmpOe2aTE/R.INSTALLa04815da5cad/PtH2O2lipids/man/PtH2O2lipids.Rd:83: missing link 'LOBSet-class-class'
  Warning: multiple methods tables found for 'polarity<-'
  Warning: replacing previous import 'xcms::polarity<-' by 'LOBSTAHS::polarity<-' when loading 'PtH2O2lipids'
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/PtH2O2lipids.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 15.6Mb
  sub-directories of 1Mb or more:
    data  15.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'PtH2O2lipids.Rd':
  'LOBSet-class-class'

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/PtH2O2lipids.Rcheck/00check.log'
for details.



Installation output

PtH2O2lipids.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/PtH2O2lipids_1.17.0.tar.gz && rm -rf PtH2O2lipids.buildbin-libdir && mkdir PtH2O2lipids.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PtH2O2lipids.buildbin-libdir PtH2O2lipids_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PtH2O2lipids_1.17.0.zip && rm PtH2O2lipids_1.17.0.tar.gz PtH2O2lipids_1.17.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  9 15.4M    9 1582k    0     0  3596k      0  0:00:04 --:--:--  0:00:04 3588k
100 15.4M  100 15.4M    0     0  11.2M      0  0:00:01  0:00:01 --:--:-- 11.2M

install for i386

* installing *source* package 'PtH2O2lipids' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
multiple methods tables found for 'polarity<-' 
Warning: replacing previous import 'xcms::polarity<-' by 'LOBSTAHS::polarity<-' when loading 'PtH2O2lipids'
** help
*** installing help indices
  converting help for package 'PtH2O2lipids'
    finding HTML links ... done
    PtH2O2lipids                            html  
REDIRECT:topic	 PtH2O2lipids -> PtH2O2lipids.html [ SUCCESS ]
REDIRECT:topic	 ptH2O2lipids -> PtH2O2lipids.html [ SUCCESS ]
    finding level-2 HTML links ... done

Rd warning: Previous alias or file overwritten by alias: ptH2O2lipids
Rd warning: D:/biocbuild/bbs-3.13-data-experiment/tmpdir/RtmpOe2aTE/R.INSTALLa04815da5cad/PtH2O2lipids/man/PtH2O2lipids.Rd:83: missing link 'LOBSet-class-class'
** building package indices
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'polarity<-'
Warning: replacing previous import 'xcms::polarity<-' by 'LOBSTAHS::polarity<-' when loading 'PtH2O2lipids'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'polarity<-'
Warning: replacing previous import 'xcms::polarity<-' by 'LOBSTAHS::polarity<-' when loading 'PtH2O2lipids'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PtH2O2lipids' ...
** testing if installed package can be loaded
Warning: multiple methods tables found for 'polarity<-'
Warning: replacing previous import 'xcms::polarity<-' by 'LOBSTAHS::polarity<-' when loading 'PtH2O2lipids'
* MD5 sums
packaged installation of 'PtH2O2lipids' as PtH2O2lipids_1.17.0.zip
* DONE (PtH2O2lipids)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'PtH2O2lipids' successfully unpacked and MD5 sums checked

Tests output


Example timings

PtH2O2lipids.Rcheck/examples_i386/PtH2O2lipids-Ex.timings

nameusersystemelapsed
PtH2O2lipids0.040.000.03

PtH2O2lipids.Rcheck/examples_x64/PtH2O2lipids-Ex.timings

nameusersystemelapsed
PtH2O2lipids0.010.000.01