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CHECK report for PepsNMRData on riesling1

This page was generated on 2021-01-11 15:59:32 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE PepsNMRData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 264/385HostnameOS / ArchINSTALLBUILDCHECK
PepsNMRData 1.9.0
Manon Martin
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/PepsNMRData
Branch: master
Last Commit: 3922255
Last Changed Date: 2020-10-27 10:28:45 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: PepsNMRData
Version: 1.9.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PepsNMRData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PepsNMRData_1.9.0.tar.gz
StartedAt: 2021-01-11 11:39:15 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:39:39 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 23.9 seconds
RetCode: 0
Status:  OK  
CheckDir: PepsNMRData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PepsNMRData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PepsNMRData_1.9.0.tar.gz
###
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##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/PepsNMRData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PepsNMRData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PepsNMRData' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PepsNMRData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 56.7Mb
  sub-directories of 1Mb or more:
    data     47.8Mb
    extdata   8.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/PepsNMRData.Rcheck/00check.log'
for details.



Installation output

PepsNMRData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/PepsNMRData_1.9.0.tar.gz && rm -rf PepsNMRData.buildbin-libdir && mkdir PepsNMRData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PepsNMRData.buildbin-libdir PepsNMRData_1.9.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PepsNMRData_1.9.0.zip && rm PepsNMRData_1.9.0.tar.gz PepsNMRData_1.9.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 32.1M    0  183k    0     0   219k      0  0:02:29 --:--:--  0:02:29  219k
  6 32.1M    6 2169k    0     0  1058k      0  0:00:31  0:00:02  0:00:29 1058k
 94 32.1M   94 30.3M    0     0  10.8M      0  0:00:02  0:00:02 --:--:-- 10.8M
100 32.1M  100 32.1M    0     0  11.4M      0  0:00:02  0:00:02 --:--:-- 11.4M

install for i386

* installing *source* package 'PepsNMRData' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
  converting help for package 'PepsNMRData'
    finding HTML links ... done
    Data_HS_sp                              html  
REDIRECT:topic	 Data_HS_sp -> Data_HS_sp.html [ SUCCESS ]
    Data_HU_sp                              html  
REDIRECT:topic	 Data_HU_sp -> Data_HU_sp.html [ SUCCESS ]
    FidData_HS                              html  
REDIRECT:topic	 FidData_HS -> FidData_HS.html [ SUCCESS ]
    FidData_HU                              html  
REDIRECT:topic	 FidData_HU -> FidData_HU.html [ SUCCESS ]
    FidInfo_HS                              html  
REDIRECT:topic	 FidInfo_HS -> FidInfo_HS.html [ SUCCESS ]
    FidInfo_HS_sp                           html  
REDIRECT:topic	 FidInfo_HS_sp -> FidInfo_HS_sp.html [ SUCCESS ]
    FidInfo_HU                              html  
REDIRECT:topic	 FidInfo_HU -> FidInfo_HU.html [ SUCCESS ]
    FidInfo_HU_sp                           html  
REDIRECT:topic	 FidInfo_HU_sp -> FidInfo_HU_sp.html [ SUCCESS ]
    FinalSpecta_HS                          html  
REDIRECT:topic	 FinalSpectra_HS -> FinalSpecta_HS.html [ SUCCESS ]
REDIRECT:file	 FinalSpecta_HS.html -> FinalSpecta_HS.html [ SUCCESS ]
    FinalSpecta_HU                          html  
REDIRECT:topic	 FinalSpectra_HU -> FinalSpecta_HU.html [ SUCCESS ]
REDIRECT:file	 FinalSpecta_HU.html -> FinalSpecta_HU.html [ SUCCESS ]
    Group_HS                                html  
REDIRECT:topic	 Group_HS -> Group_HS.html [ SUCCESS ]
    Group_HU                                html  
REDIRECT:topic	 Group_HU -> Group_HU.html [ SUCCESS ]
    PEPSNMRData-package                     html  
REDIRECT:topic	 PepsNMRData-package -> PEPSNMRData-package.html [ SUCCESS ]
REDIRECT:topic	 PepsNMRData -> PEPSNMRData-package.html [ SUCCESS ]
    RawFidData_HS                           html  
REDIRECT:topic	 RawFidData_HS -> RawFidData_HS.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PepsNMRData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PepsNMRData' as PepsNMRData_1.9.0.zip
* DONE (PepsNMRData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'PepsNMRData' successfully unpacked and MD5 sums checked

Tests output


Example timings

PepsNMRData.Rcheck/examples_i386/PepsNMRData-Ex.timings

nameusersystemelapsed
Data_HS_sp0.250.030.28
Data_HU_sp0.260.050.33
FidData_HS0.160.030.21
FidData_HU0.160.000.15
FidInfo_HS000
FidInfo_HS_sp0.000.020.02
FidInfo_HU000
FidInfo_HU_sp000
FinalSpecta_HS0.030.000.04
FinalSpecta_HU0.020.000.02
Group_HS000
Group_HU000
PEPSNMRData-package000
RawFidData_HS000

PepsNMRData.Rcheck/examples_x64/PepsNMRData-Ex.timings

nameusersystemelapsed
Data_HS_sp0.270.000.26
Data_HU_sp0.280.010.31
FidData_HS0.140.030.19
FidData_HU0.110.030.14
FidInfo_HS0.000.020.01
FidInfo_HS_sp000
FidInfo_HU000
FidInfo_HU_sp0.000.020.02
FinalSpecta_HS0.030.010.04
FinalSpecta_HU000
Group_HS000
Group_HU000
PEPSNMRData-package0.010.000.02
RawFidData_HS000