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CHECK report for PWMEnrich.Hsapiens.background on malbec2

This page was generated on 2021-01-21 16:01:19 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE PWMEnrich.Hsapiens.background PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 281/386HostnameOS / ArchINSTALLBUILDCHECK
PWMEnrich.Hsapiens.background 4.25.0
Diego Diez
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/PWMEnrich.Hsapiens.background
Branch: master
Last Commit: a4f474f
Last Changed Date: 2020-10-27 10:05:45 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  WARNINGS 

Summary

Package: PWMEnrich.Hsapiens.background
Version: 4.25.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PWMEnrich.Hsapiens.background.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PWMEnrich.Hsapiens.background_4.25.0.tar.gz
StartedAt: 2021-01-21 12:34:53 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 12:37:10 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 136.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: PWMEnrich.Hsapiens.background.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PWMEnrich.Hsapiens.background.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PWMEnrich.Hsapiens.background_4.25.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck’
* using R Under development (unstable) (2021-01-05 r79797)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PWMEnrich.Hsapiens.background/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PWMEnrich.Hsapiens.background’ version ‘4.25.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PWMEnrich.Hsapiens.background’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 15.8Mb
  sub-directories of 1Mb or more:
    data  15.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                                             old_size new_size compress
  MotifDb.Hsap.PFM.RData                        148Kb    102Kb       xz
  MotifDb.Hsap.RData                            580Kb    451Kb       xz
  PWMCutoff4.hg19.MotifDb.Hsap.RData            524Kb    407Kb       xz
  PWMCutoff5.hg19.MotifDb.Hsap.RData            524Kb    408Kb       xz
  PWMLogn.hg19.MotifDb.Hsap.RData               820Kb    645Kb       xz
  PWMPvalueCutoff1e2.hg19.MotifDb.Hsap.RData    540Kb    415Kb       xz
  PWMPvalueCutoff1e3.hg19.MotifDb.Hsap.RData    540Kb    415Kb       xz
  PWMPvalueCutoff1e4.hg19.MotifDb.Hsap.RData    540Kb    415Kb       xz
  hg19.upstream2000.RData                      11.6Mb    9.1Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/PWMEnrich.Hsapiens.background.Rcheck/00check.log’
for details.



Installation output

PWMEnrich.Hsapiens.background.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL PWMEnrich.Hsapiens.background
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘PWMEnrich.Hsapiens.background’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘PWMEnrich’
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘Biostrings::pattern’ by ‘grid::pattern’ when loading ‘PWMEnrich’
** testing if installed package keeps a record of temporary installation path
* DONE (PWMEnrich.Hsapiens.background)

Tests output


Example timings

PWMEnrich.Hsapiens.background.Rcheck/PWMEnrich.Hsapiens.background-Ex.timings

nameusersystemelapsed
PWMEnrich.Hsapiens.background-package3.1800.0523.232