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CHECK report for PWMEnrich.Dmelanogaster.background on riesling1

This page was generated on 2021-01-21 16:01:35 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE PWMEnrich.Dmelanogaster.background PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 280/386HostnameOS / ArchINSTALLBUILDCHECK
PWMEnrich.Dmelanogaster.background 4.25.0
Diego Diez
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/PWMEnrich.Dmelanogaster.background
Branch: master
Last Commit: 364c36a
Last Changed Date: 2020-10-27 09:55:42 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: PWMEnrich.Dmelanogaster.background
Version: 4.25.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PWMEnrich.Dmelanogaster.background.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PWMEnrich.Dmelanogaster.background_4.25.0.tar.gz
StartedAt: 2021-01-21 11:40:57 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:42:16 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 79.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: PWMEnrich.Dmelanogaster.background.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PWMEnrich.Dmelanogaster.background.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PWMEnrich.Dmelanogaster.background_4.25.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/PWMEnrich.Dmelanogaster.background.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PWMEnrich.Dmelanogaster.background/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PWMEnrich.Dmelanogaster.background' version '4.25.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PWMEnrich.Dmelanogaster.background' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.9Mb
  sub-directories of 1Mb or more:
    data   7.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                                            old_size new_size compress
  MotifDb.Dmel.PFM.RData                        43Kb     29Kb       xz
  MotifDb.Dmel.RData                           178Kb    123Kb       xz
  PWMCutoff4.dm3.MotifDb.Dmel.RData            173Kb    115Kb       xz
  PWMCutoff5.dm3.MotifDb.Dmel.RData            172Kb    115Kb       xz
  PWMLogn.dm3.MotifDb.Dmel.RData               199Kb    135Kb       xz
  PWMPvalueCutoff1e2.dm3.MotifDb.Dmel.RData    182Kb    119Kb       xz
  PWMPvalueCutoff1e3.dm3.MotifDb.Dmel.RData    181Kb    118Kb       xz
  PWMPvalueCutoff1e4.dm3.MotifDb.Dmel.RData    181Kb    117Kb       xz
  dm3.upstream2000.RData                       6.5Mb    5.7Mb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/PWMEnrich.Dmelanogaster.background.Rcheck/00check.log'
for details.



Installation output

PWMEnrich.Dmelanogaster.background.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/PWMEnrich.Dmelanogaster.background_4.25.0.tar.gz && rm -rf PWMEnrich.Dmelanogaster.background.buildbin-libdir && mkdir PWMEnrich.Dmelanogaster.background.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PWMEnrich.Dmelanogaster.background.buildbin-libdir PWMEnrich.Dmelanogaster.background_4.25.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PWMEnrich.Dmelanogaster.background_4.25.0.zip && rm PWMEnrich.Dmelanogaster.background_4.25.0.tar.gz PWMEnrich.Dmelanogaster.background_4.25.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 7924k  100 7924k    0     0  31.4M      0 --:--:-- --:--:-- --:--:-- 31.5M

install for i386

* installing *source* package 'PWMEnrich.Dmelanogaster.background' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'PWMEnrich.Dmelanogaster.background'
    finding HTML links ... done
    PWMEnrich.Dmelanogster.background-package
                                            html  
REDIRECT:topic	 PWMEnrich.Dmelanogaster.background-package -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMEnrich.Dmelanogaster.background -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 MotifDb.Dmel.PFM -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMLogn.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMCutoff4.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMCutoff5.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMPvalueCutoff1e2.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMPvalueCutoff1e3.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 PWMPvalueCutoff1e4.dm3.MotifDb.Dmel -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:topic	 dm3.upstream2000 -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
REDIRECT:file	 PWMEnrich.Dmelanogster.background-package.html -> PWMEnrich.Dmelanogster.background-package.html [ SUCCESS ]
    finding level-2 HTML links ... done

** building package indices
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'PWMEnrich'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'PWMEnrich'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PWMEnrich.Dmelanogaster.background' ...
** testing if installed package can be loaded
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'PWMEnrich'
* MD5 sums
packaged installation of 'PWMEnrich.Dmelanogaster.background' as PWMEnrich.Dmelanogaster.background_4.25.0.zip
* DONE (PWMEnrich.Dmelanogaster.background)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'PWMEnrich.Dmelanogaster.background' successfully unpacked and MD5 sums checked

Tests output


Example timings

PWMEnrich.Dmelanogaster.background.Rcheck/examples_i386/PWMEnrich.Dmelanogaster.background-Ex.timings

nameusersystemelapsed
PWMEnrich.Dmelanogster.background-package0.710.020.72

PWMEnrich.Dmelanogaster.background.Rcheck/examples_x64/PWMEnrich.Dmelanogaster.background-Ex.timings

nameusersystemelapsed
PWMEnrich.Dmelanogster.background-package0.750.030.78