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CHECK report for MouseGastrulationData on riesling1

This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE MouseGastrulationData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 234/386HostnameOS / ArchINSTALLBUILDCHECK
MouseGastrulationData 1.5.5
Jonathan Griffiths
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/MouseGastrulationData
Branch: master
Last Commit: 1f56913
Last Changed Date: 2021-01-17 10:22:59 -0500 (Sun, 17 Jan 2021)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: MouseGastrulationData
Version: 1.5.5
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MouseGastrulationData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MouseGastrulationData_1.5.5.tar.gz
StartedAt: 2021-01-21 11:36:42 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:42:33 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 351.4 seconds
RetCode: 0
Status:  OK  
CheckDir: MouseGastrulationData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MouseGastrulationData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MouseGastrulationData_1.5.5.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MouseGastrulationData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MouseGastrulationData/DESCRIPTION' ... OK
* this is package 'MouseGastrulationData' version '1.5.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MouseGastrulationData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
Tal1ChimeraData    20.12   1.12   24.33
TChimeraData       16.92   0.99   20.06
EmbryoAtlasData    15.88   1.41   19.70
WTChimeraData      14.74   1.30   18.37
LohoffSeqFISHData   8.52   0.45   10.01
GuibentifExtraData  7.01   0.53    8.88
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
Tal1ChimeraData    20.75   1.31   24.44
TChimeraData       17.69   1.07   20.36
EmbryoAtlasData    16.85   1.41   20.31
WTChimeraData      15.48   1.23   18.89
LohoffSeqFISHData   8.76   0.56   10.26
GuibentifExtraData  7.58   0.53    8.88
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MouseGastrulationData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MouseGastrulationData_1.5.5.tar.gz && rm -rf MouseGastrulationData.buildbin-libdir && mkdir MouseGastrulationData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MouseGastrulationData.buildbin-libdir MouseGastrulationData_1.5.5.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MouseGastrulationData_1.5.5.zip && rm MouseGastrulationData_1.5.5.tar.gz MouseGastrulationData_1.5.5.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 45013  100 45013    0     0   709k      0 --:--:-- --:--:-- --:--:--  709k

install for i386

* installing *source* package 'MouseGastrulationData' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MouseGastrulationData'
    finding HTML links ... done
    AtlasSampleMetadata                     html  
REDIRECT:topic	 AtlasSampleMetadata -> AtlasSampleMetadata.html [ SUCCESS ]
    BPSATACData                             html  
REDIRECT:topic	 BPSATACData -> BPSATACData.html [ SUCCESS ]
    finding level-2 HTML links ... done

    EmbryoAtlasData                         html  
REDIRECT:topic	 EmbryoAtlasData -> EmbryoAtlasData.html [ SUCCESS ]
    EmbryoCelltypeColours                   html  
REDIRECT:topic	 EmbryoCelltypeColours -> EmbryoCelltypeColours.html [ SUCCESS ]
    GuibentifExtraData                      html  
REDIRECT:topic	 GuibentifExtraData -> GuibentifExtraData.html [ SUCCESS ]
    LohoffSeqFISHData                       html  
REDIRECT:topic	 LohoffSeqFISHData -> LohoffSeqFISHData.html [ SUCCESS ]
    MouseGastrulationData-package           html  
REDIRECT:topic	 MouseGastrulationData-package -> MouseGastrulationData-package.html [ SUCCESS ]
REDIRECT:topic	 MouseGastrulationData -> MouseGastrulationData-package.html [ SUCCESS ]
    TChimeraData                            html  
REDIRECT:topic	 TChimeraData -> TChimeraData.html [ SUCCESS ]
    Tal1ChimeraData                         html  
REDIRECT:topic	 Tal1ChimeraData -> Tal1ChimeraData.html [ SUCCESS ]
    WTChimeraData                           html  
REDIRECT:topic	 WTChimeraData -> WTChimeraData.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MouseGastrulationData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MouseGastrulationData' as MouseGastrulationData_1.5.5.zip
* DONE (MouseGastrulationData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MouseGastrulationData' successfully unpacked and MD5 sums checked

Tests output


Example timings

MouseGastrulationData.Rcheck/examples_i386/MouseGastrulationData-Ex.timings

nameusersystemelapsed
AtlasSampleMetadata000
BPSATACData000
EmbryoAtlasData15.88 1.4119.70
EmbryoCelltypeColours000
GuibentifExtraData7.010.538.88
LohoffSeqFISHData 8.52 0.4510.01
TChimeraData16.92 0.9920.06
Tal1ChimeraData20.12 1.1224.33
WTChimeraData14.74 1.3018.37

MouseGastrulationData.Rcheck/examples_x64/MouseGastrulationData-Ex.timings

nameusersystemelapsed
AtlasSampleMetadata000
BPSATACData000
EmbryoAtlasData16.85 1.4120.31
EmbryoCelltypeColours000
GuibentifExtraData7.580.538.88
LohoffSeqFISHData 8.76 0.5610.26
TChimeraData17.69 1.0720.36
Tal1ChimeraData20.75 1.3124.44
WTChimeraData15.48 1.2318.89