Michael Zon
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/MetaGxBreast |
| Branch: master |
| Last Commit: 51a013c |
| Last Changed Date: 2020-10-27 10:26:22 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:09 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE MetaGxBreast PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 216/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| MetaGxBreast 1.11.0 Michael Zon
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: MetaGxBreast |
| Version: 1.11.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaGxBreast.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MetaGxBreast_1.11.0.tar.gz |
| StartedAt: 2021-01-14 11:27:16 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:33:12 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 356.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaGxBreast.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaGxBreast.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MetaGxBreast_1.11.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MetaGxBreast.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MetaGxBreast/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaGxBreast' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'Biobase', 'lattice', 'impute', 'AnnotationHub', 'ExperimentHub',
'SummarizedExperiment'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaGxBreast' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
loadBreastDatasets 66.75 5.74 97.02
loadBreastEsets 18.97 1.20 21.33
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
loadBreastDatasets 69.27 4.54 79.78
loadBreastEsets 17.90 1.32 20.39
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'required.R'
OK
** running tests for arch 'x64' ...
Running 'required.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/MetaGxBreast.Rcheck/00check.log'
for details.
MetaGxBreast.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MetaGxBreast_1.11.0.tar.gz && rm -rf MetaGxBreast.buildbin-libdir && mkdir MetaGxBreast.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MetaGxBreast.buildbin-libdir MetaGxBreast_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MetaGxBreast_1.11.0.zip && rm MetaGxBreast_1.11.0.tar.gz MetaGxBreast_1.11.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 35263 3 1219 0 0 10418 0 0:00:03 --:--:-- 0:00:03 10330
100 35263 100 35263 0 0 291k 0 --:--:-- --:--:-- --:--:-- 291k
install for i386
* installing *source* package 'MetaGxBreast' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MetaGxBreast'
finding HTML links ... done
CAL html
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** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MetaGxBreast' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaGxBreast' as MetaGxBreast_1.11.0.zip
* DONE (MetaGxBreast)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MetaGxBreast' successfully unpacked and MD5 sums checked
|
MetaGxBreast.Rcheck/tests_i386/required.Rout R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # > > proc.time() user system elapsed 0.07 0.04 0.12 |
MetaGxBreast.Rcheck/tests_x64/required.Rout R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # > > proc.time() user system elapsed 0.04 0.06 0.10 |
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MetaGxBreast.Rcheck/examples_i386/MetaGxBreast-Ex.timings
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MetaGxBreast.Rcheck/examples_x64/MetaGxBreast-Ex.timings
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