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### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSstatsBioData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MSstatsBioData_1.13.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MSstatsBioData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSstatsBioData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSstatsBioData' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSstatsBioData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.1Mb
  sub-directories of 1Mb or more:
    data   5.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
File 'data/datalist' contains malformed line(s):
  ''
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
SRM_crc_validation 40.52   0.02   40.61
DDA_cardio         22.78   0.31   23.19
SRM_crc_training   11.72   0.03   11.82
SRM_mpm_validation  5.03   0.00    5.13
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
SRM_crc_validation 41.13   0.03   41.29
DDA_cardio         22.68   0.64   23.49
SRM_crc_training   11.97   0.03   12.08
SRM_mpm_validation  5.28   0.04    5.37
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/MSstatsBioData.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MSstatsBioData_1.13.0.tar.gz && rm -rf MSstatsBioData.buildbin-libdir && mkdir MSstatsBioData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsBioData.buildbin-libdir MSstatsBioData_1.13.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MSstatsBioData_1.13.0.zip && rm MSstatsBioData_1.13.0.tar.gz MSstatsBioData_1.13.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 2861k    0 15815    0     0   275k      0  0:00:10 --:--:--  0:00:10  270k
100 2861k  100 2861k    0     0  3586k      0 --:--:-- --:--:-- --:--:-- 3581k

install for i386

* installing *source* package 'MSstatsBioData' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
  converting help for package 'MSstatsBioData'
    finding HTML links ... done
    DDA_cardio                              html  
REDIRECT:topic	 data:DDA_cardio -> DDA_cardio.html [ FAIL ]
REDIRECT:topic	 DDA_cardio -> DDA_cardio.html [ SUCCESS ]
    MSstatsBioData-package                  html  
REDIRECT:topic	 MSstatsBioData-package -> MSstatsBioData-package.html [ SUCCESS ]
REDIRECT:topic	 MSstatsBioData -> MSstatsBioData-package.html [ SUCCESS ]
    SRM_crc_training                        html  
REDIRECT:topic	 data:SRM_crc_training -> SRM_crc_training.html [ FAIL ]
REDIRECT:topic	 SRM_crc_training -> SRM_crc_training.html [ SUCCESS ]
    SRM_crc_validation                      html  
REDIRECT:topic	 data:SRM_crc_validation -> SRM_crc_validation.html [ FAIL ]
REDIRECT:topic	 SRM_crc_validation -> SRM_crc_validation.html [ SUCCESS ]
    SRM_mpm_training                        html  
REDIRECT:topic	 data:SRM_mpm_training -> SRM_mpm_training.html [ FAIL ]
REDIRECT:topic	 SRM_mpm_training -> SRM_mpm_training.html [ SUCCESS ]
    SRM_mpm_validation                      html  
REDIRECT:topic	 data:SRM_mpm_validation -> SRM_mpm_validation.html [ FAIL ]
REDIRECT:topic	 SRM_mpm_validation -> SRM_mpm_validation.html [ SUCCESS ]
    SRM_ovarian                             html  
REDIRECT:topic	 data:SRM_ovarian -> SRM_ovarian.html [ FAIL ]
REDIRECT:topic	 SRM_ovarian -> SRM_ovarian.html [ SUCCESS ]
    SRM_yeast                               html  
REDIRECT:topic	 data:SRM_yeast -> SRM_yeast.html [ FAIL ]
REDIRECT:topic	 SRM_yeast -> SRM_yeast.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsBioData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsBioData' as MSstatsBioData_1.13.0.zip
* DONE (MSstatsBioData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MSstatsBioData' successfully unpacked and MD5 sums checked