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CHECK report for MMDiffBamSubset on riesling1

This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE MMDiffBamSubset PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 230/386HostnameOS / ArchINSTALLBUILDCHECK
MMDiffBamSubset 1.27.0
Gabriele Schweikert
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/MMDiffBamSubset
Branch: master
Last Commit: 209a507
Last Changed Date: 2020-10-27 10:01:49 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: MMDiffBamSubset
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MMDiffBamSubset.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MMDiffBamSubset_1.27.0.tar.gz
StartedAt: 2021-01-21 11:34:21 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:36:55 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 154.3 seconds
RetCode: 0
Status:  OK  
CheckDir: MMDiffBamSubset.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MMDiffBamSubset.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MMDiffBamSubset_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MMDiffBamSubset.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MMDiffBamSubset/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MMDiffBamSubset' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MMDiffBamSubset' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 633.2Mb
  sub-directories of 1Mb or more:
    extdata  633.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/MMDiffBamSubset.Rcheck/00check.log'
for details.



Installation output

MMDiffBamSubset.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MMDiffBamSubset_1.27.0.tar.gz && rm -rf MMDiffBamSubset.buildbin-libdir && mkdir MMDiffBamSubset.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MMDiffBamSubset.buildbin-libdir MMDiffBamSubset_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MMDiffBamSubset_1.27.0.zip && rm MMDiffBamSubset_1.27.0.tar.gz MMDiffBamSubset_1.27.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  632M    0  531k    0     0   845k      0  0:12:46 --:--:--  0:12:46  843k
 11  632M   11 70.2M    0     0  44.0M      0  0:00:14  0:00:01  0:00:13 43.9M
 23  632M   23  149M    0     0  57.6M      0  0:00:10  0:00:02  0:00:08 57.6M
 35  632M   35  222M    0     0  62.0M      0  0:00:10  0:00:03  0:00:07 61.9M
 45  632M   45  287M    0     0  61.6M      0  0:00:10  0:00:04  0:00:06 61.6M
 51  632M   51  328M    0     0  58.7M      0  0:00:10  0:00:05  0:00:05 66.0M
 56  632M   56  359M    0     0  54.4M      0  0:00:11  0:00:06  0:00:05 57.8M
 69  632M   69  439M    0     0  56.7M      0  0:00:11  0:00:07  0:00:04 56.2M
 71  632M   71  451M    0     0  52.5M      0  0:00:12  0:00:08  0:00:04 45.6M
 80  632M   80  506M    0     0  52.7M      0  0:00:11  0:00:09  0:00:02 44.2M
 84  632M   84  537M    0     0  50.6M      0  0:00:12  0:00:10  0:00:02 41.6M
 95  632M   95  603M    0     0  52.0M      0  0:00:12  0:00:11  0:00:01 48.8M
100  632M  100  632M    0     0  52.4M      0  0:00:12  0:00:12 --:--:-- 44.7M

install for i386

* installing *source* package 'MMDiffBamSubset' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MMDiffBamSubset'
    finding HTML links ... done
    MMDiffBamSubset-package                 html  
REDIRECT:topic	 MMDiffBamSubset-package -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 MMDiffBamSubset -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Cfp1.Exp -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 WT.AB2 -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Null.AB2 -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Resc.AB2 -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Input -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 WT.AB2.Peaks -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Null.AB2.Peaks -> MMDiffBamSubset-package.html [ SUCCESS ]
REDIRECT:topic	 Resc.AB2.Peaks -> MMDiffBamSubset-package.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MMDiffBamSubset' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MMDiffBamSubset' as MMDiffBamSubset_1.27.0.zip
* DONE (MMDiffBamSubset)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MMDiffBamSubset' successfully unpacked and MD5 sums checked

Tests output


Example timings

MMDiffBamSubset.Rcheck/examples_i386/MMDiffBamSubset-Ex.timings

nameusersystemelapsed
MMDiffBamSubset-package000

MMDiffBamSubset.Rcheck/examples_x64/MMDiffBamSubset-Ex.timings

nameusersystemelapsed
MMDiffBamSubset-package000