Back to Multiple platform build/check report for BioC 3.13 experimental data
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

CHECK report for MEEBOdata on riesling1

This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE MEEBOdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 215/386HostnameOS / ArchINSTALLBUILDCHECK
MEEBOdata 1.29.0
Agnes Paquet
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/MEEBOdata
Branch: master
Last Commit: 217f6d7
Last Changed Date: 2020-10-27 09:46:47 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: MEEBOdata
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEEBOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEEBOdata_1.29.0.tar.gz
StartedAt: 2021-01-21 11:32:03 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:32:28 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 25.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: MEEBOdata.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEEBOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEEBOdata_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEEBOdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEEBOdata' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEEBOdata' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.buildbin-libdir/00LOCK-MEEBOdata/00new/MEEBOdata/help/RDI108\_n.gpr.html': No such file or directory
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 15.1Mb
  sub-directories of 1Mb or more:
    Meebo  12.2Mb
    data    2.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                old_size new_size compress
  MEEBOctrl.rda     13Kb     10Kb       xz
  MEEBOset.rda     2.9Mb    2.0Mb       xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck/00check.log'
for details.



Installation output

MEEBOdata.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MEEBOdata_1.29.0.tar.gz && rm -rf MEEBOdata.buildbin-libdir && mkdir MEEBOdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEEBOdata.buildbin-libdir MEEBOdata_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEEBOdata_1.29.0.zip && rm MEEBOdata_1.29.0.tar.gz MEEBOdata_1.29.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3 7061k    3  223k    0     0   303k      0  0:00:23 --:--:--  0:00:23  303k
 19 7061k   19 1381k    0     0   772k      0  0:00:09  0:00:01  0:00:08  772k
 28 7061k   28 1994k    0     0   752k      0  0:00:09  0:00:02  0:00:07  751k
 43 7061k   43 3040k    0     0   789k      0  0:00:08  0:00:03  0:00:05  789k
 60 7061k   60 4258k    0     0   842k      0  0:00:08  0:00:05  0:00:03  842k
 75 7061k   75 5307k    0     0   908k      0  0:00:07  0:00:05  0:00:02  995k
 86 7061k   86 6100k    0     0   910k      0  0:00:07  0:00:06  0:00:01  961k
100 7061k  100 7061k    0     0  1023k      0  0:00:06  0:00:06 --:--:-- 1193k

install for i386

* installing *source* package 'MEEBOdata' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'MEEBOdata'
    finding HTML links ... done
    MEEBOdata                               html  
REDIRECT:topic	 MEEBO -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic	 MEEBOset -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic	 MEEBOctrl -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic	 MEEBOtilingres -> MEEBOdata.html [ SUCCESS ]
REDIRECT:file	 MEEBOdata.html -> MEEBOdata.html [ SUCCESS ]
    StanfordExampleData                     html  
REDIRECT:topic	 RDI108\_n.gpr -> StanfordExampleData.html [ FAIL ]
REDIRECT:topic	 StanfordDCV1.7complete.txt -> StanfordExampleData.html [ SUCCESS ]
REDIRECT:file	 StanfordExampleData.html -> StanfordExampleData.html [ SUCCESS ]
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.buildbin-libdir/00LOCK-MEEBOdata/00new/MEEBOdata/help/RDI108\_n.gpr.html': No such file or directory
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MEEBOdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEEBOdata' as MEEBOdata_1.29.0.zip
* DONE (MEEBOdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MEEBOdata' successfully unpacked and MD5 sums checked

Tests output


Example timings