Agnes Paquet
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/MEEBOdata |
| Branch: master |
| Last Commit: 217f6d7 |
| Last Changed Date: 2020-10-27 09:46:47 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:31 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE MEEBOdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 215/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| MEEBOdata 1.29.0 Agnes Paquet
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: MEEBOdata |
| Version: 1.29.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEEBOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEEBOdata_1.29.0.tar.gz |
| StartedAt: 2021-01-21 11:32:03 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:32:28 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 25.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: MEEBOdata.Rcheck |
| Warnings: 2 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEEBOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEEBOdata_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEEBOdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEEBOdata' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEEBOdata' can be installed ... WARNING
Found the following significant warnings:
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.buildbin-libdir/00LOCK-MEEBOdata/00new/MEEBOdata/help/RDI108\_n.gpr.html': No such file or directory
See 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 15.1Mb
sub-directories of 1Mb or more:
Meebo 12.2Mb
data 2.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
MEEBOctrl.rda 13Kb 10Kb xz
MEEBOset.rda 2.9Mb 2.0Mb xz
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.Rcheck/00check.log'
for details.
MEEBOdata.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MEEBOdata_1.29.0.tar.gz && rm -rf MEEBOdata.buildbin-libdir && mkdir MEEBOdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEEBOdata.buildbin-libdir MEEBOdata_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEEBOdata_1.29.0.zip && rm MEEBOdata_1.29.0.tar.gz MEEBOdata_1.29.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 7061k 3 223k 0 0 303k 0 0:00:23 --:--:-- 0:00:23 303k
19 7061k 19 1381k 0 0 772k 0 0:00:09 0:00:01 0:00:08 772k
28 7061k 28 1994k 0 0 752k 0 0:00:09 0:00:02 0:00:07 751k
43 7061k 43 3040k 0 0 789k 0 0:00:08 0:00:03 0:00:05 789k
60 7061k 60 4258k 0 0 842k 0 0:00:08 0:00:05 0:00:03 842k
75 7061k 75 5307k 0 0 908k 0 0:00:07 0:00:05 0:00:02 995k
86 7061k 86 6100k 0 0 910k 0 0:00:07 0:00:06 0:00:01 961k
100 7061k 100 7061k 0 0 1023k 0 0:00:06 0:00:06 --:--:-- 1193k
install for i386
* installing *source* package 'MEEBOdata' ...
** using staged installation
** data
** inst
** help
*** installing help indices
converting help for package 'MEEBOdata'
finding HTML links ... done
MEEBOdata html
REDIRECT:topic MEEBO -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic MEEBOset -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic MEEBOctrl -> MEEBOdata.html [ SUCCESS ]
REDIRECT:topic MEEBOtilingres -> MEEBOdata.html [ SUCCESS ]
REDIRECT:file MEEBOdata.html -> MEEBOdata.html [ SUCCESS ]
StanfordExampleData html
REDIRECT:topic RDI108\_n.gpr -> StanfordExampleData.html [ FAIL ]
REDIRECT:topic StanfordDCV1.7complete.txt -> StanfordExampleData.html [ SUCCESS ]
REDIRECT:file StanfordExampleData.html -> StanfordExampleData.html [ SUCCESS ]
Rd warning: cannot open file 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEEBOdata.buildbin-libdir/00LOCK-MEEBOdata/00new/MEEBOdata/help/RDI108\_n.gpr.html': No such file or directory
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MEEBOdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEEBOdata' as MEEBOdata_1.29.0.zip
* DONE (MEEBOdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MEEBOdata' successfully unpacked and MD5 sums checked