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CHECK report for MEDIPSData on riesling1

This page was generated on 2021-01-18 15:58:48 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE MEDIPSData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 214/385HostnameOS / ArchINSTALLBUILDCHECK
MEDIPSData 1.27.0
Lukas Chavez
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/MEDIPSData
Branch: master
Last Commit: 77e3a9b
Last Changed Date: 2020-10-27 09:56:26 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: MEDIPSData
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEDIPSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEDIPSData_1.27.0.tar.gz
StartedAt: 2021-01-18 11:30:57 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:31:32 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 35.2 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: MEDIPSData.Rcheck
Warnings: 1

Command output

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##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEDIPSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEDIPSData_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEDIPSData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEDIPSData' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEDIPSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 173.9Mb
  sub-directories of 1Mb or more:
    data      30.1Mb
    extdata  143.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
File 'data/datalist' contains malformed line(s):
  ''
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck/00check.log'
for details.



Installation output

MEDIPSData.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MEDIPSData_1.27.0.tar.gz && rm -rf MEDIPSData.buildbin-libdir && mkdir MEDIPSData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDIPSData.buildbin-libdir MEDIPSData_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEDIPSData_1.27.0.zip && rm MEDIPSData_1.27.0.tar.gz MEDIPSData_1.27.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  163M    0 15812    0     0  25058      0  1:53:45 --:--:--  1:53:45 25058
  1  163M    1 2188k    0     0  1680k      0  0:01:39  0:00:01  0:01:38 1679k
  2  163M    2 4058k    0     0  1699k      0  0:01:38  0:00:02  0:01:36 1698k
  3  163M    3 5156k    0     0  1465k      0  0:01:53  0:00:03  0:01:50 1465k
  4  163M    4 7167k    0     0  1661k      0  0:01:40  0:00:04  0:01:36 1661k
  7  163M    7 12.9M    0     0  2514k      0  0:01:06  0:00:05  0:01:01 2851k
 25  163M   25 41.8M    0     0  6820k      0  0:00:24  0:00:06  0:00:18 8161k
 46  163M   46 76.2M    0     0  10.3M      0  0:00:15  0:00:07  0:00:08 14.4M
 77  163M   77  126M    0     0  15.2M      0  0:00:10  0:00:08  0:00:02 25.3M
 93  163M   93  152M    0     0  16.4M      0  0:00:09  0:00:09 --:--:-- 29.2M
 97  163M   97  159M    0     0  15.2M      0  0:00:10  0:00:10 --:--:-- 28.2M
100  163M  100  163M    0     0  15.2M      0  0:00:10  0:00:10 --:--:-- 27.5M

install for i386

* installing *source* package 'MEDIPSData' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'MEDIPSData'
    finding HTML links ... done
    CS                                      html  
REDIRECT:topic	 CS -> CS.html [ SUCCESS ]
    DE_Input                                html  
REDIRECT:topic	 DE_Input -> DE_Input.html [ SUCCESS ]
    DE_MeDIP                                html  
REDIRECT:topic	 DE_MeDIP -> DE_MeDIP.html [ SUCCESS ]
    NSCLC_dataset                           html  
REDIRECT:topic	 NSCLC_dataset -> NSCLC_dataset.html [ SUCCESS ]
    annotation                              html  
REDIRECT:topic	 annotation -> annotation.html [ SUCCESS ]
    hESCs_Input                             html  
REDIRECT:topic	 hESCs_Input -> hESCs_Input.html [ SUCCESS ]
    hESCs_MeDIP                             html  
REDIRECT:topic	 hESCs_MeDIP -> hESCs_MeDIP.html [ SUCCESS ]
    mart_gene                               html  
REDIRECT:topic	 mart_gene -> mart_gene.html [ SUCCESS ]
    resultTable                             html  
REDIRECT:topic	 resultTable -> resultTable.html [ SUCCESS ]
    samplesNSCLC                            html  
REDIRECT:topic	 samplesNSCLC -> samplesNSCLC.html [ SUCCESS ]
    tcga_luad_lusc_450kmeth                 html  
REDIRECT:topic	 tcga_luad_lusc_450kmeth -> tcga_luad_lusc_450kmeth.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MEDIPSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPSData' as MEDIPSData_1.27.0.zip
* DONE (MEDIPSData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MEDIPSData' successfully unpacked and MD5 sums checked

Tests output


Example timings

MEDIPSData.Rcheck/examples_i386/MEDIPSData-Ex.timings

nameusersystemelapsed
CS000
DE_Input000
DE_MeDIP000
NSCLC_dataset000
annotation000
hESCs_Input000
hESCs_MeDIP000
mart_gene000
resultTable000
samplesNSCLC000
tcga_luad_lusc_450kmeth000

MEDIPSData.Rcheck/examples_x64/MEDIPSData-Ex.timings

nameusersystemelapsed
CS000
DE_Input000
DE_MeDIP000
NSCLC_dataset000
annotation000
hESCs_Input000
hESCs_MeDIP000
mart_gene000
resultTable000
samplesNSCLC000
tcga_luad_lusc_450kmeth000