Lukas Chavez
| Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021) |
| URL: https://git.bioconductor.org/packages/MEDIPSData |
| Branch: master |
| Last Commit: 77e3a9b |
| Last Changed Date: 2020-10-27 09:56:26 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-18 15:58:48 -0500 (Mon, 18 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE MEDIPSData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 214/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| MEDIPSData 1.27.0 Lukas Chavez
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: MEDIPSData |
| Version: 1.27.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEDIPSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEDIPSData_1.27.0.tar.gz |
| StartedAt: 2021-01-18 11:30:57 -0500 (Mon, 18 Jan 2021) |
| EndedAt: 2021-01-18 11:31:32 -0500 (Mon, 18 Jan 2021) |
| EllapsedTime: 35.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: MEDIPSData.Rcheck |
| Warnings: 1 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MEDIPSData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MEDIPSData_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEDIPSData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEDIPSData' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEDIPSData' can be installed ... OK
* checking installed package size ... NOTE
installed size is 173.9Mb
sub-directories of 1Mb or more:
data 30.1Mb
extdata 143.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
File 'data/datalist' contains malformed line(s):
''
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/MEDIPSData.Rcheck/00check.log'
for details.
MEDIPSData.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/MEDIPSData_1.27.0.tar.gz && rm -rf MEDIPSData.buildbin-libdir && mkdir MEDIPSData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MEDIPSData.buildbin-libdir MEDIPSData_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MEDIPSData_1.27.0.zip && rm MEDIPSData_1.27.0.tar.gz MEDIPSData_1.27.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 163M 0 15812 0 0 25058 0 1:53:45 --:--:-- 1:53:45 25058
1 163M 1 2188k 0 0 1680k 0 0:01:39 0:00:01 0:01:38 1679k
2 163M 2 4058k 0 0 1699k 0 0:01:38 0:00:02 0:01:36 1698k
3 163M 3 5156k 0 0 1465k 0 0:01:53 0:00:03 0:01:50 1465k
4 163M 4 7167k 0 0 1661k 0 0:01:40 0:00:04 0:01:36 1661k
7 163M 7 12.9M 0 0 2514k 0 0:01:06 0:00:05 0:01:01 2851k
25 163M 25 41.8M 0 0 6820k 0 0:00:24 0:00:06 0:00:18 8161k
46 163M 46 76.2M 0 0 10.3M 0 0:00:15 0:00:07 0:00:08 14.4M
77 163M 77 126M 0 0 15.2M 0 0:00:10 0:00:08 0:00:02 25.3M
93 163M 93 152M 0 0 16.4M 0 0:00:09 0:00:09 --:--:-- 29.2M
97 163M 97 159M 0 0 15.2M 0 0:00:10 0:00:10 --:--:-- 28.2M
100 163M 100 163M 0 0 15.2M 0 0:00:10 0:00:10 --:--:-- 27.5M
install for i386
* installing *source* package 'MEDIPSData' ...
** using staged installation
** data
** inst
** help
*** installing help indices
converting help for package 'MEDIPSData'
finding HTML links ... done
CS html
REDIRECT:topic CS -> CS.html [ SUCCESS ]
DE_Input html
REDIRECT:topic DE_Input -> DE_Input.html [ SUCCESS ]
DE_MeDIP html
REDIRECT:topic DE_MeDIP -> DE_MeDIP.html [ SUCCESS ]
NSCLC_dataset html
REDIRECT:topic NSCLC_dataset -> NSCLC_dataset.html [ SUCCESS ]
annotation html
REDIRECT:topic annotation -> annotation.html [ SUCCESS ]
hESCs_Input html
REDIRECT:topic hESCs_Input -> hESCs_Input.html [ SUCCESS ]
hESCs_MeDIP html
REDIRECT:topic hESCs_MeDIP -> hESCs_MeDIP.html [ SUCCESS ]
mart_gene html
REDIRECT:topic mart_gene -> mart_gene.html [ SUCCESS ]
resultTable html
REDIRECT:topic resultTable -> resultTable.html [ SUCCESS ]
samplesNSCLC html
REDIRECT:topic samplesNSCLC -> samplesNSCLC.html [ SUCCESS ]
tcga_luad_lusc_450kmeth html
REDIRECT:topic tcga_luad_lusc_450kmeth -> tcga_luad_lusc_450kmeth.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MEDIPSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPSData' as MEDIPSData_1.27.0.zip
* DONE (MEDIPSData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'MEDIPSData' successfully unpacked and MD5 sums checked
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MEDIPSData.Rcheck/examples_i386/MEDIPSData-Ex.timings
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MEDIPSData.Rcheck/examples_x64/MEDIPSData-Ex.timings
|