Back to Build/check report for BioC 3.13 experimental data
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2021-10-16 15:58:41 -0400 (Sat, 16 Oct 2021).

CHECK results for MAQCsubsetAFX on malbec2

To the developers/maintainers of the MAQCsubsetAFX package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 219/406HostnameOS / ArchINSTALLBUILDCHECK
MAQCsubsetAFX 1.30.0  (landing page)
Laurent Gatto
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/MAQCsubsetAFX
git_branch: RELEASE_3_13
git_last_commit: 7521495
git_last_commit_date: 2021-05-19 11:27:27 -0400 (Wed, 19 May 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: MAQCsubsetAFX
Version: 1.30.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MAQCsubsetAFX.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MAQCsubsetAFX_1.30.0.tar.gz
StartedAt: 2021-10-16 13:29:47 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 13:30:45 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 57.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: MAQCsubsetAFX.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MAQCsubsetAFX.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MAQCsubsetAFX_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MAQCsubsetAFX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MAQCsubsetAFX/DESCRIPTION’ ... OK
* this is package ‘MAQCsubsetAFX’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MAQCsubsetAFX’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'MAQCsubsetAFX' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MAQCsubsetAFX.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 38.8Mb
  sub-directories of 1Mb or more:
    data  38.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘Biobase’ ‘affy’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MAQCsubsetAFX.Rcheck/00check.log’
for details.



Installation output

MAQCsubsetAFX.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL MAQCsubsetAFX
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘MAQCsubsetAFX’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MAQCsubsetAFX' is deprecated and will be removed from
  Bioconductor version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'MAQCsubsetAFX' is deprecated and will be removed from
  Bioconductor version 3.14
** testing if installed package keeps a record of temporary installation path
* DONE (MAQCsubsetAFX)

Tests output


Example timings