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CHECK report for KOdata on riesling1

This page was generated on 2021-01-21 16:01:30 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE KOdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 194/386HostnameOS / ArchINSTALLBUILDCHECK
KOdata 1.17.0
Shana White
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/KOdata
Branch: master
Last Commit: aff2ad8
Last Changed Date: 2020-10-27 10:21:44 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: KOdata
Version: 1.17.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:KOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings KOdata_1.17.0.tar.gz
StartedAt: 2021-01-21 11:30:20 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:30:39 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 18.7 seconds
RetCode: 0
Status:  OK  
CheckDir: KOdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:KOdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings KOdata_1.17.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/KOdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KOdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KOdata' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KOdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 58.2Mb
  sub-directories of 1Mb or more:
    data  58.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/KOdata.Rcheck/00check.log'
for details.



Installation output

KOdata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/KOdata_1.17.0.tar.gz && rm -rf KOdata.buildbin-libdir && mkdir KOdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KOdata.buildbin-libdir KOdata_1.17.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL KOdata_1.17.0.zip && rm KOdata_1.17.0.tar.gz KOdata_1.17.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 31.7M    0  246k    0     0   200k      0  0:02:42  0:00:01  0:02:41  200k
100 31.7M  100 31.7M    0     0  16.4M      0  0:00:01  0:00:01 --:--:-- 16.4M

install for i386

* installing *source* package 'KOdata' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
  converting help for package 'KOdata'
    finding HTML links ... done
    KO_data                                 html  
REDIRECT:topic	 KO_data -> KO_data.html [ SUCCESS ]
    KOdata                                  html  
REDIRECT:topic	 KOdata -> KOdata.html [ SUCCESS ]
REDIRECT:topic	 KOdata-package -> KOdata.html [ SUCCESS ]
    gene_cell_info                          html  
REDIRECT:topic	 gene_cell_info -> gene_cell_info.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KOdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KOdata' as KOdata_1.17.0.zip
* DONE (KOdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'KOdata' successfully unpacked and MD5 sums checked

Tests output


Example timings