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CHECK report for KEGGandMetacoreDzPathwaysGEO on riesling1

This page was generated on 2021-01-21 16:01:30 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE KEGGandMetacoreDzPathwaysGEO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 191/386HostnameOS / ArchINSTALLBUILDCHECK
KEGGandMetacoreDzPathwaysGEO 1.11.0
Gaurav Bhatti
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Branch: master
Last Commit: 2a5f8a4
Last Changed Date: 2020-10-27 10:09:09 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 1.11.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz
StartedAt: 2021-01-21 11:29:49 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:30:48 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 59.2 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGandMetacoreDzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGandMetacoreDzPathwaysGEO' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGandMetacoreDzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log'
for details.



Installation output

KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz && rm -rf KEGGandMetacoreDzPathwaysGEO.buildbin-libdir && mkdir KEGGandMetacoreDzPathwaysGEO.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGandMetacoreDzPathwaysGEO.buildbin-libdir KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL KEGGandMetacoreDzPathwaysGEO_1.11.0.zip && rm KEGGandMetacoreDzPathwaysGEO_1.11.0.tar.gz KEGGandMetacoreDzPathwaysGEO_1.11.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 44 98.5M   44 43.3M    0     0  63.7M      0  0:00:01 --:--:--  0:00:01 63.6M
100 98.5M  100 98.5M    0     0  76.7M      0  0:00:01  0:00:01 --:--:-- 76.8M

install for i386

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'KEGGandMetacoreDzPathwaysGEO'
    finding HTML links ... done
    GSE1145                                 html  
REDIRECT:topic	 GSE1145 -> GSE1145.html [ SUCCESS ]
    GSE11906                                html  
REDIRECT:topic	 GSE11906 -> GSE11906.html [ SUCCESS ]
    GSE14924_CD4                            html  
REDIRECT:topic	 GSE14924_CD4 -> GSE14924_CD4.html [ SUCCESS ]
    GSE14924_CD8                            html  
REDIRECT:topic	 GSE14924_CD8 -> GSE14924_CD8.html [ SUCCESS ]
    GSE16759                                html  
REDIRECT:topic	 GSE16759 -> GSE16759.html [ SUCCESS ]
    GSE19420                                html  
REDIRECT:topic	 GSE19420 -> GSE19420.html [ SUCCESS ]
    GSE20164                                html  
REDIRECT:topic	 GSE20164 -> GSE20164.html [ SUCCESS ]
    GSE22780                                html  
REDIRECT:topic	 GSE22780 -> GSE22780.html [ SUCCESS ]
    GSE23878                                html  
REDIRECT:topic	 GSE23878 -> GSE23878.html [ SUCCESS ]
    GSE24739_G0                             html  
REDIRECT:topic	 GSE24739_G0 -> GSE24739_G0.html [ SUCCESS ]
    GSE24739_G1                             html  
REDIRECT:topic	 GSE24739_G1 -> GSE24739_G1.html [ SUCCESS ]
    GSE30153                                html  
REDIRECT:topic	 GSE30153 -> GSE30153.html [ SUCCESS ]
    GSE32676                                html  
REDIRECT:topic	 GSE32676 -> GSE32676.html [ SUCCESS ]
    GSE38666_epithelia                      html  
REDIRECT:topic	 GSE38666_epithelia -> GSE38666_epithelia.html [ SUCCESS ]
    GSE38666_stroma                         html  
REDIRECT:topic	 GSE38666_stroma -> GSE38666_stroma.html [ SUCCESS ]
    GSE4183                                 html  
REDIRECT:topic	 GSE4183 -> GSE4183.html [ SUCCESS ]
    GSE42057                                html  
REDIRECT:topic	 GSE42057 -> GSE42057.html [ SUCCESS ]
    GSE7305                                 html  
REDIRECT:topic	 GSE7305 -> GSE7305.html [ SUCCESS ]
    KEGGandMetacoreDzPathwaysGEO-package    html  
REDIRECT:topic	 KEGGandMetacoreDzPathwaysGEO-package -> KEGGandMetacoreDzPathwaysGEO-package.html [ SUCCESS ]
REDIRECT:topic	 KEGGandMetacoreDzPathwaysGEO -> KEGGandMetacoreDzPathwaysGEO-package.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KEGGandMetacoreDzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGandMetacoreDzPathwaysGEO' as KEGGandMetacoreDzPathwaysGEO_1.11.0.zip
* DONE (KEGGandMetacoreDzPathwaysGEO)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'KEGGandMetacoreDzPathwaysGEO' successfully unpacked and MD5 sums checked

Tests output


Example timings

KEGGandMetacoreDzPathwaysGEO.Rcheck/examples_i386/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.300.000.29
GSE119062.640.062.71
GSE14924_CD40.220.020.24
GSE14924_CD80.220.020.23
GSE167590.260.010.28
GSE194200.190.020.20
GSE201640.060.000.06
GSE227800.210.000.21
GSE238780.650.030.68
GSE24739_G00.390.030.43
GSE24739_G10.400.000.39
GSE301530.460.020.49
GSE326760.610.030.64
GSE38666_epithelia0.30.00.3
GSE38666_stroma0.190.010.20
GSE41830.200.030.24
GSE420570.840.030.87
GSE73050.610.020.63
KEGGandMetacoreDzPathwaysGEO-package0.580.000.57

KEGGandMetacoreDzPathwaysGEO.Rcheck/examples_x64/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.230.000.24
GSE119062.070.032.09
GSE14924_CD40.150.040.19
GSE14924_CD80.160.010.17
GSE167590.220.020.24
GSE194200.140.010.15
GSE201640.040.000.05
GSE227800.140.020.15
GSE238780.520.060.58
GSE24739_G00.300.020.31
GSE24739_G10.310.000.31
GSE301530.370.010.39
GSE326760.500.030.54
GSE38666_epithelia0.190.030.21
GSE38666_stroma0.140.000.14
GSE41830.170.020.18
GSE420570.660.010.67
GSE73050.480.020.50
KEGGandMetacoreDzPathwaysGEO-package0.450.000.45