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INSTALL report for JctSeqData on riesling1

This page was generated on 2021-01-11 15:59:31 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE JctSeqData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 190/385HostnameOS / ArchINSTALLBUILDCHECK
JctSeqData 1.21.1
Stephen Hartley
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/JctSeqData
Branch: master
Last Commit: 50b6ba0
Last Changed Date: 2020-11-30 08:25:59 -0500 (Mon, 30 Nov 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  ERROR 
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  ERROR 

Summary

Package: JctSeqData
Version: 1.21.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/JctSeqData_1.21.1.tar.gz && rm -rf JctSeqData.buildbin-libdir && mkdir JctSeqData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=JctSeqData.buildbin-libdir JctSeqData_1.21.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL JctSeqData_1.21.1.zip && rm JctSeqData_1.21.1.tar.gz JctSeqData_1.21.1.zip
StartedAt: 2021-01-11 09:51:46 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 09:52:03 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 17.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/JctSeqData_1.21.1.tar.gz && rm -rf JctSeqData.buildbin-libdir && mkdir JctSeqData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=JctSeqData.buildbin-libdir JctSeqData_1.21.1.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL JctSeqData_1.21.1.zip && rm JctSeqData_1.21.1.tar.gz JctSeqData_1.21.1.zip
###
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100 20.4M  100 20.4M    0     0  30.2M      0 --:--:-- --:--:-- --:--:-- 30.2M

install for i386

* installing *source* package 'JctSeqData' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace 'JunctionSeq' is not available and has been replaced
by .GlobalEnv when processing object 'jscs'
Warning: namespace 'JunctionSeq' is not available and has been replaced
by .GlobalEnv when processing object 'jscs'
Warning: namespace 'JunctionSeq' is not available and has been replaced
by .GlobalEnv when processing object 'jscs2'
Warning: namespace 'JunctionSeq' is not available and has been replaced
by .GlobalEnv when processing object 'jscs2'
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'JctSeqData'
    finding HTML links ... done
    exampleDataSet                          html  
REDIRECT:topic	 fullExampleDataSet -> exampleDataSet.html [ SUCCESS ]
REDIRECT:topic	 jscs -> exampleDataSet.html [ SUCCESS ]
REDIRECT:topic	 jscs2 -> exampleDataSet.html [ SUCCESS ]
REDIRECT:topic	 exampleDataSet -> exampleDataSet.html [ SUCCESS ]
REDIRECT:topic	 tinyExampleDataSet -> exampleDataSet.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'JctSeqData' is deprecated and will be removed from
  Bioconductor version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'JctSeqData' is deprecated and will be removed from
  Bioconductor version 3.14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'JctSeqData' ...
** testing if installed package can be loaded
Warning: Package 'JctSeqData' is deprecated and will be removed from
  Bioconductor version 3.14
* MD5 sums
packaged installation of 'JctSeqData' as JctSeqData_1.21.1.zip
* DONE (JctSeqData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'JctSeqData' successfully unpacked and MD5 sums checked