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CHECK report for Fletcher2013a on riesling1

This page was generated on 2021-01-18 15:58:47 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE Fletcher2013a PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 123/385HostnameOS / ArchINSTALLBUILDCHECK
Fletcher2013a 1.27.0
Mauro Castro
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/Fletcher2013a
Branch: master
Last Commit: 7f69c1a
Last Changed Date: 2020-10-27 10:04:57 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: Fletcher2013a
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Fletcher2013a.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Fletcher2013a_1.27.0.tar.gz
StartedAt: 2021-01-18 11:22:04 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:22:53 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 49.8 seconds
RetCode: 0
Status:  OK  
CheckDir: Fletcher2013a.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Fletcher2013a.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Fletcher2013a_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/Fletcher2013a.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Fletcher2013a/DESCRIPTION' ... OK
* this is package 'Fletcher2013a' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Fletcher2013a' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 72.9Mb
  sub-directories of 1Mb or more:
    data  72.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/Fletcher2013a.Rcheck/00check.log'
for details.



Installation output

Fletcher2013a.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/Fletcher2013a_1.27.0.tar.gz && rm -rf Fletcher2013a.buildbin-libdir && mkdir Fletcher2013a.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Fletcher2013a.buildbin-libdir Fletcher2013a_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Fletcher2013a_1.27.0.zip && rm Fletcher2013a_1.27.0.tar.gz Fletcher2013a_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 38 72.8M   38 28.1M    0     0  94.5M      0 --:--:-- --:--:-- --:--:-- 94.5M
100 72.8M  100 72.8M    0     0  95.3M      0 --:--:-- --:--:-- --:--:-- 95.2M

install for i386

* installing *source* package 'Fletcher2013a' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Fletcher2013a'
    finding HTML links ... done
    Exp1                                    html  
REDIRECT:topic	 Exp1 -> Exp1.html [ SUCCESS ]
REDIRECT:topic	 Exp1limma -> Exp1.html [ SUCCESS ]
REDIRECT:topic	 Fletcher2013a -> Exp1.html [ SUCCESS ]
    Exp2                                    html  
REDIRECT:topic	 Exp2 -> Exp2.html [ SUCCESS ]
REDIRECT:topic	 Exp2limma -> Exp2.html [ SUCCESS ]
    Exp3                                    html  
REDIRECT:topic	 Exp3 -> Exp3.html [ SUCCESS ]
REDIRECT:topic	 Exp3limma -> Exp3.html [ SUCCESS ]
    Fletcher2013a.pipelines                 html  
REDIRECT:topic	 Fletcher2013pipeline.limma -> Fletcher2013a.pipelines.html [ SUCCESS ]
REDIRECT:topic	 Fletcher2013pipeline.pca -> Fletcher2013a.pipelines.html [ SUCCESS ]
REDIRECT:topic	 Fletcher2013pipeline.deg -> Fletcher2013a.pipelines.html [ SUCCESS ]
REDIRECT:topic	 Fletcher2013pipeline.supp -> Fletcher2013a.pipelines.html [ SUCCESS ]
REDIRECT:file	 Fletcher2013a.pipelines.html -> Fletcher2013a.pipelines.html [ SUCCESS ]
    siESR1                                  html  
REDIRECT:topic	 siESR1 -> siESR1.html [ SUCCESS ]
REDIRECT:topic	 siESR1limma -> siESR1.html [ SUCCESS ]
    siOTHERS                                html  
REDIRECT:topic	 siOTHERS -> siOTHERS.html [ SUCCESS ]
REDIRECT:topic	 siOTHERSlimma -> siOTHERS.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Fletcher2013a' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Fletcher2013a' as Fletcher2013a_1.27.0.zip
* DONE (Fletcher2013a)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'Fletcher2013a' successfully unpacked and MD5 sums checked

Tests output


Example timings

Fletcher2013a.Rcheck/examples_i386/Fletcher2013a-Ex.timings

nameusersystemelapsed
Exp10.470.000.46
Exp20.490.060.55
Exp30.860.050.90
Fletcher2013a.pipelines000
siESR10.170.000.18
siOTHERS0.410.000.41

Fletcher2013a.Rcheck/examples_x64/Fletcher2013a-Ex.timings

nameusersystemelapsed
Exp10.340.020.36
Exp20.410.010.42
Exp30.630.040.66
Fletcher2013a.pipelines000
siESR10.140.000.14
siOTHERS0.320.010.35