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CHECK report for FieldEffectCrc on riesling1

This page was generated on 2021-01-18 15:58:47 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE FieldEffectCrc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 120/385HostnameOS / ArchINSTALLBUILDCHECK
FieldEffectCrc 1.1.0
Christopher Dampier
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/FieldEffectCrc
Branch: master
Last Commit: 74e7533
Last Changed Date: 2020-10-27 10:32:06 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: FieldEffectCrc
Version: 1.1.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FieldEffectCrc.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings FieldEffectCrc_1.1.0.tar.gz
StartedAt: 2021-01-18 11:21:50 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:27:19 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 329.6 seconds
RetCode: 0
Status:  OK  
CheckDir: FieldEffectCrc.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FieldEffectCrc.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings FieldEffectCrc_1.1.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/FieldEffectCrc.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FieldEffectCrc/DESCRIPTION' ... OK
* this is package 'FieldEffectCrc' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FieldEffectCrc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
FieldEffectCrc 19.91   1.74   23.64
cohort_A        7.56   0.67    8.98
cohort_C        4.83   0.25    5.78
make_txi        4.56   0.44    5.26
reorder_assays  4.53   0.42    5.22
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
FieldEffectCrc 19.78   1.93   23.11
cohort_A        7.74   0.57    9.20
reorder_assays  4.83   0.46    5.59
cohort_C        4.86   0.35    5.87
cohort_B        4.25   0.43    5.20
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

FieldEffectCrc.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/FieldEffectCrc_1.1.0.tar.gz && rm -rf FieldEffectCrc.buildbin-libdir && mkdir FieldEffectCrc.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FieldEffectCrc.buildbin-libdir FieldEffectCrc_1.1.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FieldEffectCrc_1.1.0.zip && rm FieldEffectCrc_1.1.0.tar.gz FieldEffectCrc_1.1.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 13262  100 13262    0     0   809k      0 --:--:-- --:--:-- --:--:--  809k

install for i386

* installing *source* package 'FieldEffectCrc' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FieldEffectCrc'
    finding HTML links ... done
    FieldEffectCrc                          html  
REDIRECT:topic	 FieldEffectCrc-package -> FieldEffectCrc.html [ SUCCESS ]
REDIRECT:topic	 FieldEffectCrc -> FieldEffectCrc.html [ SUCCESS ]
    cohort_A                                html  
REDIRECT:topic	 cohort-A -> cohort_A.html [ SUCCESS ]
REDIRECT:topic	 cohortA -> cohort_A.html [ SUCCESS ]
REDIRECT:topic	 cohort A from Dampier et al. -> cohort_A.html [ SUCCESS ]
REDIRECT:file	 cohort_A.html -> cohort_A.html [ SUCCESS ]
    cohort_B                                html  
REDIRECT:topic	 cohort-B -> cohort_B.html [ SUCCESS ]
REDIRECT:topic	 cohortB -> cohort_B.html [ SUCCESS ]
REDIRECT:topic	 cohort B from Dampier et al. -> cohort_B.html [ SUCCESS ]
REDIRECT:file	 cohort_B.html -> cohort_B.html [ SUCCESS ]
    cohort_C                                html  
REDIRECT:topic	 cohort-C -> cohort_C.html [ SUCCESS ]
REDIRECT:topic	 cohortC -> cohort_C.html [ SUCCESS ]
REDIRECT:topic	 cohort C from Dampier et al. -> cohort_C.html [ SUCCESS ]
REDIRECT:file	 cohort_C.html -> cohort_C.html [ SUCCESS ]
    make_txi                                html  
REDIRECT:topic	 make_txi -> make_txi.html [ SUCCESS ]
    reorder_assays                          html  
REDIRECT:topic	 reorder_assays -> reorder_assays.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2021-01-15
** testing if installed package can be loaded from final location
snapshotDate(): 2021-01-15
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FieldEffectCrc' ...
** testing if installed package can be loaded
snapshotDate(): 2021-01-15
* MD5 sums
packaged installation of 'FieldEffectCrc' as FieldEffectCrc_1.1.0.zip
* DONE (FieldEffectCrc)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'FieldEffectCrc' successfully unpacked and MD5 sums checked

Tests output

FieldEffectCrc.Rcheck/tests_i386/runTests.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("FieldEffectCrc")
snapshotDate(): 2021-01-15
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache


RUNIT TEST PROTOCOL -- Mon Jan 18 11:26:52 2021 
*********************************************** 
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
FieldEffectCrc RUnit Tests - 3 test functions, 0 errors, 0 failures
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  15.12    1.57   17.95 

FieldEffectCrc.Rcheck/tests_x64/runTests.Rout


R Under development (unstable) (2020-12-30 r79736) -- "Unsuffered Consequences"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("FieldEffectCrc")
snapshotDate(): 2021-01-15
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache
snapshotDate(): 2021-01-15
see ?FieldEffectCrc and browseVignettes('FieldEffectCrc') for documentation
loading from cache


RUNIT TEST PROTOCOL -- Mon Jan 18 11:27:11 2021 
*********************************************** 
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
FieldEffectCrc RUnit Tests - 3 test functions, 0 errors, 0 failures
Number of test functions: 3 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  15.79    1.43   18.40 

Example timings

FieldEffectCrc.Rcheck/examples_i386/FieldEffectCrc-Ex.timings

nameusersystemelapsed
FieldEffectCrc19.91 1.7423.64
cohort_A7.560.678.98
cohort_B3.670.284.75
cohort_C4.830.255.78
make_txi4.560.445.26
reorder_assays4.530.425.22

FieldEffectCrc.Rcheck/examples_x64/FieldEffectCrc-Ex.timings

nameusersystemelapsed
FieldEffectCrc19.78 1.9323.11
cohort_A7.740.579.20
cohort_B4.250.435.20
cohort_C4.860.355.87
make_txi4.200.334.80
reorder_assays4.830.465.59