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CHECK report for EatonEtAlChIPseq on riesling1

This page was generated on 2021-01-21 16:01:27 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE EatonEtAlChIPseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 108/386HostnameOS / ArchINSTALLBUILDCHECK
EatonEtAlChIPseq 0.29.0
Patrick Aboyoun
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/EatonEtAlChIPseq
Branch: master
Last Commit: 7adbe25
Last Changed Date: 2020-10-27 09:51:54 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: EatonEtAlChIPseq
Version: 0.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EatonEtAlChIPseq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EatonEtAlChIPseq_0.29.0.tar.gz
StartedAt: 2021-01-21 11:21:17 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:23:32 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 134.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: EatonEtAlChIPseq.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EatonEtAlChIPseq.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EatonEtAlChIPseq_0.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/EatonEtAlChIPseq.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EatonEtAlChIPseq/DESCRIPTION' ... OK
* this is package 'EatonEtAlChIPseq' version '0.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EatonEtAlChIPseq' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.6Mb
  sub-directories of 1Mb or more:
    extdata  20.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Output for data("orcAlignsRep1", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcAlignsRep2", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcPeaksRep1", package = "EatonEtAlChIPseq"):
  Search path was changed
Output for data("orcPeaksRep2", package = "EatonEtAlChIPseq"):
  Search path was changed
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
orcAligns 5.53   0.57    6.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
orcAligns 5.98   0.55    6.53
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/EatonEtAlChIPseq.Rcheck/00check.log'
for details.



Installation output

EatonEtAlChIPseq.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/EatonEtAlChIPseq_0.29.0.tar.gz && rm -rf EatonEtAlChIPseq.buildbin-libdir && mkdir EatonEtAlChIPseq.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EatonEtAlChIPseq.buildbin-libdir EatonEtAlChIPseq_0.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EatonEtAlChIPseq_0.29.0.zip && rm EatonEtAlChIPseq_0.29.0.tar.gz EatonEtAlChIPseq_0.29.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 43 20.5M   43 9183k    0     0  32.3M      0 --:--:-- --:--:-- --:--:-- 32.2M
100 20.5M  100 20.5M    0     0  51.6M      0 --:--:-- --:--:-- --:--:-- 51.5M

install for i386

* installing *source* package 'EatonEtAlChIPseq' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'EatonEtAlChIPseq'
    finding HTML links ... done
    orcAligns                               html  
REDIRECT:topic	 orcAlignsRep1 -> orcAligns.html [ SUCCESS ]
REDIRECT:topic	 orcAlignsRep2 -> orcAligns.html [ SUCCESS ]
REDIRECT:file	 orcAligns.html -> orcAligns.html [ SUCCESS ]
    orcPeaks                                html  
REDIRECT:topic	 orcPeaksRep1 -> orcPeaks.html [ SUCCESS ]
REDIRECT:topic	 orcPeaksRep2 -> orcPeaks.html [ SUCCESS ]
REDIRECT:file	 orcPeaks.html -> orcPeaks.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EatonEtAlChIPseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EatonEtAlChIPseq' as EatonEtAlChIPseq_0.29.0.zip
* DONE (EatonEtAlChIPseq)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'EatonEtAlChIPseq' successfully unpacked and MD5 sums checked

Tests output


Example timings

EatonEtAlChIPseq.Rcheck/examples_i386/EatonEtAlChIPseq-Ex.timings

nameusersystemelapsed
orcAligns5.530.576.11
orcPeaks0.150.020.17

EatonEtAlChIPseq.Rcheck/examples_x64/EatonEtAlChIPseq-Ex.timings

nameusersystemelapsed
orcAligns5.980.556.53
orcPeaks0.180.000.17