Tiago Chedraoui Silva
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/ELMER.data |
| Branch: master |
| Last Commit: 25cce04 |
| Last Changed Date: 2020-10-27 10:13:21 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:27 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE ELMER.data PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 111/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| ELMER.data 2.15.0 Tiago Chedraoui Silva
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: ELMER.data |
| Version: 2.15.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ELMER.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ELMER.data_2.15.0.tar.gz |
| StartedAt: 2021-01-21 11:21:46 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:24:59 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 193.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ELMER.data.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ELMER.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ELMER.data_2.15.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ELMER.data.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ELMER.data/DESCRIPTION' ... OK
* this is package 'ELMER.data' version '2.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'ELMER.data' can be installed ... OK
* checking installed package size ... NOTE
installed size is 293.1Mb
sub-directories of 1Mb or more:
data 292.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 36 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/ELMER.data.Rcheck/00check.log'
for details.
ELMER.data.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ELMER.data_2.15.0.tar.gz && rm -rf ELMER.data.buildbin-libdir && mkdir ELMER.data.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ELMER.data.buildbin-libdir ELMER.data_2.15.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ELMER.data_2.15.0.zip && rm ELMER.data_2.15.0.tar.gz ELMER.data_2.15.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
12 292M 12 37.5M 0 0 42.5M 0 0:00:06 --:--:-- 0:00:06 42.5M
41 292M 41 122M 0 0 66.0M 0 0:00:04 0:00:01 0:00:03 66.0M
56 292M 56 164M 0 0 57.5M 0 0:00:05 0:00:02 0:00:03 57.5M
65 292M 65 191M 0 0 49.7M 0 0:00:05 0:00:03 0:00:02 49.7M
100 292M 100 292M 0 0 61.4M 0 0:00:04 0:00:04 --:--:-- 61.4M
install for i386
* installing *source* package 'ELMER.data' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ELMER.data'
finding HTML links ... done
ELMER.data html
REDIRECT:topic ELMER.data -> ELMER.data.html [ SUCCESS ]
REDIRECT:topic ELMER.data-package -> ELMER.data.html [ SUCCESS ]
EPIC.hg19.manifest html
REDIRECT:topic EPIC.hg19.manifest -> EPIC.hg19.manifest.html [ SUCCESS ]
EPIC.hg38.manifest html
REDIRECT:topic EPIC.hg38.manifest -> EPIC.hg38.manifest.html [ SUCCESS ]
GeneExp html
REDIRECT:topic GeneExp -> GeneExp.html [ SUCCESS ]
Human_genes__GRCh37_p13 html
REDIRECT:topic Human_genes__GRCh37_p13 -> Human_genes__GRCh37_p13.html [ SUCCESS ]
Human_genes__GRCh37_p13__tss html
REDIRECT:topic Human_genes__GRCh37_p13__tss -> Human_genes__GRCh37_p13__tss.html [ SUCCESS ]
Human_genes__GRCh38_p12 html
REDIRECT:topic Human_genes__GRCh38_p12 -> Human_genes__GRCh38_p12.html [ SUCCESS ]
Human_genes__GRCh38_p12__tss html
REDIRECT:topic Human_genes__GRCh38_p12__tss -> Human_genes__GRCh38_p12__tss.html [ SUCCESS ]
Meth html
REDIRECT:topic Meth -> Meth.html [ SUCCESS ]
Probes.motif.hg19.450K html
REDIRECT:topic Probes.motif.hg19.450K -> Probes.motif.hg19.450K.html [ SUCCESS ]
Probes.motif.hg19.EPIC html
REDIRECT:topic Probes.motif.hg19.EPIC -> Probes.motif.hg19.EPIC.html [ SUCCESS ]
Probes.motif.hg38.450K html
REDIRECT:topic Probes.motif.hg38.450K -> Probes.motif.hg38.450K.html [ SUCCESS ]
Probes.motif.hg38.EPIC html
REDIRECT:topic Probes.motif.hg38.EPIC -> Probes.motif.hg38.EPIC.html [ SUCCESS ]
TF.family html
REDIRECT:topic TF.family -> TF.family.html [ SUCCESS ]
TF.subfamily html
REDIRECT:topic TF.subfamily -> TF.subfamily.html [ SUCCESS ]
data html
REDIRECT:topic data -> data.html [ SUCCESS ]
hm450.hg19.manifest html
REDIRECT:topic hm450.hg19.manifest -> hm450.hg19.manifest.html [ SUCCESS ]
hm450.hg38.manifest html
REDIRECT:topic hm450.hg38.manifest -> hm450.hg38.manifest.html [ SUCCESS ]
hocomoco.table html
REDIRECT:topic hocomoco.table -> hocomoco.table.html [ SUCCESS ]
human.TF html
REDIRECT:topic human.TF -> human.TF.html [ SUCCESS ]
mae.promoter html
REDIRECT:topic mae.promoter -> mae.promoter.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ELMER.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ELMER.data' as ELMER.data_2.15.0.zip
* DONE (ELMER.data)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ELMER.data' successfully unpacked and MD5 sums checked
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ELMER.data.Rcheck/examples_i386/ELMER.data-Ex.timings
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ELMER.data.Rcheck/examples_x64/ELMER.data-Ex.timings
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