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CHECK report for DrugVsDiseasedata on riesling1

This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE DrugVsDiseasedata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 103/385HostnameOS / ArchINSTALLBUILDCHECK
DrugVsDiseasedata 1.27.0
J. Saez-Rodriguez
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/DrugVsDiseasedata
Branch: master
Last Commit: 3e2ff74
Last Changed Date: 2020-10-27 10:01:18 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: DrugVsDiseasedata
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DrugVsDiseasedata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DrugVsDiseasedata_1.27.0.tar.gz
StartedAt: 2021-01-14 11:15:27 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:15:47 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 20.2 seconds
RetCode: 0
Status:  OK  
CheckDir: DrugVsDiseasedata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DrugVsDiseasedata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DrugVsDiseasedata_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/DrugVsDiseasedata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DrugVsDiseasedata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DrugVsDiseasedata' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DrugVsDiseasedata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: DrugVsDiseasedata-package.Rd:33-35: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/DrugVsDiseasedata.Rcheck/00check.log'
for details.



Installation output

DrugVsDiseasedata.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/DrugVsDiseasedata_1.27.0.tar.gz && rm -rf DrugVsDiseasedata.buildbin-libdir && mkdir DrugVsDiseasedata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DrugVsDiseasedata.buildbin-libdir DrugVsDiseasedata_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DrugVsDiseasedata_1.27.0.zip && rm DrugVsDiseasedata_1.27.0.tar.gz DrugVsDiseasedata_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 4048k    0 15815    0     0  31009      0  0:02:13 --:--:--  0:02:13 30949
 43 4048k   43 1754k    0     0  1249k      0  0:00:03  0:00:01  0:00:02 1248k
 76 4048k   76 3089k    0     0  1203k      0  0:00:03  0:00:02  0:00:01 1203k
100 4048k  100 4048k    0     0  1421k      0  0:00:02  0:00:02 --:--:-- 1421k

install for i386

* installing *source* package 'DrugVsDiseasedata' ...
** using staged installation
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
  converting help for package 'DrugVsDiseasedata'
    finding HTML links ... done
    DrugVsDiseasedata-package               html  
REDIRECT:topic	 DrugVsDiseasedata-package -> DrugVsDiseasedata-package.html [ SUCCESS ]
REDIRECT:topic	 DrugVsDiseasedata -> DrugVsDiseasedata-package.html [ SUCCESS ]
    GEOfactorvalues                         html  
REDIRECT:topic	 GEOfactorvalues -> GEOfactorvalues.html [ SUCCESS ]
    annotationlist                          html  
REDIRECT:topic	 annotationlist -> annotationlist.html [ SUCCESS ]
    cytodisease                             html  
REDIRECT:topic	 cytodisease -> cytodisease.html [ SUCCESS ]
    diseaseClusters                         html  
REDIRECT:topic	 diseaseClusters -> diseaseClusters.html [ SUCCESS ]
    diseaseRL                               html  
REDIRECT:topic	 diseaseRL -> diseaseRL.html [ SUCCESS ]
    diseaselabels                           html  
REDIRECT:topic	 diseaselabels -> diseaselabels.html [ SUCCESS ]
    genelist                                html  
REDIRECT:topic	 genelist -> genelist.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DrugVsDiseasedata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DrugVsDiseasedata' as DrugVsDiseasedata_1.27.0.zip
* DONE (DrugVsDiseasedata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'DrugVsDiseasedata' successfully unpacked and MD5 sums checked

Tests output


Example timings

DrugVsDiseasedata.Rcheck/examples_i386/DrugVsDiseasedata-Ex.timings

nameusersystemelapsed
DrugVsDiseasedata-package0.000.010.02
GEOfactorvalues000
annotationlist000
cytodisease0.020.000.02
diseaseClusters000
diseaseRL000
diseaselabels0.010.000.02
genelist000

DrugVsDiseasedata.Rcheck/examples_x64/DrugVsDiseasedata-Ex.timings

nameusersystemelapsed
DrugVsDiseasedata-package0.010.000.02
GEOfactorvalues000
annotationlist000
cytodisease000
diseaseClusters000
diseaseRL000
diseaselabels0.000.020.02
genelist000