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INSTALL report for DeSousa2013 on riesling1

This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE DeSousa2013 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 92/385HostnameOS / ArchINSTALLBUILDCHECK
DeSousa2013 1.27.0
Xin Wang
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/DeSousa2013
Branch: master
Last Commit: bb7af97
Last Changed Date: 2020-10-27 10:02:18 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64 [ OK ] OK  OK 

Summary

Package: DeSousa2013
Version: 1.27.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/DeSousa2013_1.27.0.tar.gz && rm -rf DeSousa2013.buildbin-libdir && mkdir DeSousa2013.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeSousa2013.buildbin-libdir DeSousa2013_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DeSousa2013_1.27.0.zip && rm DeSousa2013_1.27.0.tar.gz DeSousa2013_1.27.0.zip
StartedAt: 2021-01-14 10:13:17 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 10:13:52 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/DeSousa2013_1.27.0.tar.gz && rm -rf DeSousa2013.buildbin-libdir && mkdir DeSousa2013.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeSousa2013.buildbin-libdir DeSousa2013_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DeSousa2013_1.27.0.zip && rm DeSousa2013_1.27.0.tar.gz DeSousa2013_1.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 44.0M    0  1213    0     0   1886      0  6:48:15 --:--:--  6:48:15  1883
100 44.0M  100 44.0M    0     0  37.3M      0  0:00:01  0:00:01 --:--:-- 37.3M

install for i386

* installing *source* package 'DeSousa2013' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DeSousa2013'
    finding HTML links ... done
    CRCPipeLine                             html  
REDIRECT:topic	 CRCPipeLine -> CRCPipeLine.html [ SUCCESS ]
REDIRECT:topic	 DeSousa2013 -> CRCPipeLine.html [ SUCCESS ]
    buildClassifier                         html  
REDIRECT:topic	 buildClassifier -> buildClassifier.html [ SUCCESS ]
REDIRECT:topic	 figPAMCV -> buildClassifier.html [ SUCCESS ]
    compGapStats                            html  
REDIRECT:topic	 compGapStats -> compGapStats.html [ SUCCESS ]
REDIRECT:topic	 figGAP -> compGapStats.html [ SUCCESS ]
    conClust                                html  
REDIRECT:topic	 conClust -> conClust.html [ SUCCESS ]
    data-AMC                                html  
REDIRECT:topic	 AMC_CRC_clinical -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 AMC_sample_head -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 ge.all -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 selPbs -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 gapsmat -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 gapsSE -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 sdat -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 uniGenes -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 clus -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 clus.f -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 sdat.f -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 silh -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 diffGenes -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 diffGenes.f -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 pam.rslt -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 signature -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 thresh -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 err -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 cents -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 clu.pred -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 sdat.sig -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 pred -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 gclu.f -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 nam.ord -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 surv -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 survstats -> data-AMC.html [ SUCCESS ]
REDIRECT:topic	 data4surv -> data-AMC.html [ SUCCESS ]
REDIRECT:file	 data-AMC.html -> data-AMC.html [ SUCCESS ]
    filterDiffGenes                         html  
REDIRECT:topic	 filterDiffGenes -> filterDiffGenes.html [ SUCCESS ]
    filterSamples                           html  
REDIRECT:topic	 filterSamples -> filterSamples.html [ SUCCESS ]
REDIRECT:topic	 figSilh -> filterSamples.html [ SUCCESS ]
    findDiffGenes                           html  
REDIRECT:topic	 findDiffGenes -> findDiffGenes.html [ SUCCESS ]
    geneExpPre                              html  
REDIRECT:topic	 geneExpPre -> geneExpPre.html [ SUCCESS ]
    getCentroids                            html  
REDIRECT:topic	 getCentroids -> getCentroids.html [ SUCCESS ]
    pamClassify                             html  
REDIRECT:topic	 pamClassify -> pamClassify.html [ SUCCESS ]
REDIRECT:topic	 figClassify -> pamClassify.html [ SUCCESS ]
    pbs2unigenes                            html  
REDIRECT:topic	 pbs2unigenes -> pbs2unigenes.html [ SUCCESS ]
    progAMC                                 html  
REDIRECT:topic	 progAMC -> progAMC.html [ SUCCESS ]
REDIRECT:topic	 figKM -> progAMC.html [ SUCCESS ]
    selTopVarGenes                          html  
REDIRECT:topic	 selTopVarGenes -> selTopVarGenes.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DeSousa2013' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DeSousa2013' as DeSousa2013_1.27.0.zip
* DONE (DeSousa2013)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'DeSousa2013' successfully unpacked and MD5 sums checked