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CHECK report for DAPARdata on riesling1

This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE DAPARdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 88/385HostnameOS / ArchINSTALLBUILDCHECK
DAPARdata 1.21.0
Samuel Wieczorek
Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021)
URL: https://git.bioconductor.org/packages/DAPARdata
Branch: master
Last Commit: bc1bf19
Last Changed Date: 2020-10-27 10:18:29 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: DAPARdata
Version: 1.21.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DAPARdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DAPARdata_1.21.0.tar.gz
StartedAt: 2021-01-14 11:13:24 -0500 (Thu, 14 Jan 2021)
EndedAt: 2021-01-14 11:15:24 -0500 (Thu, 14 Jan 2021)
EllapsedTime: 120.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: DAPARdata.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DAPARdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DAPARdata_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DAPARdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAPARdata' version '1.21.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DAPARdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 50.4Mb
  sub-directories of 1Mb or more:
    data     10.4Mb
    extdata  39.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                       old_size new_size compress
  Exp1_R25_pept.RData     2.3Mb    1.3Mb       xz
  Exp1_R25_prot.RData     1.1Mb    597Kb       xz
  Exp1_R2_pept.RData      1.3Mb    873Kb       xz
  Exp1_R2_prot.RData      1.1Mb    563Kb       xz
  Exp2_R100_pept.RData    1.0Mb    569Kb       xz
  Exp2_R100_prot.RData    558Kb    262Kb       xz
  Exp2_R10_pept.RData     1.0Mb    571Kb       xz
  Exp2_R10_prot.RData     563Kb    264Kb       xz
  Exp2_R2_pept.RData     1007Kb    550Kb       xz
  Exp2_R2_prot.RData      564Kb    259Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/DAPARdata.Rcheck/00check.log'
for details.



Installation output

DAPARdata.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/DAPARdata_1.21.0.tar.gz && rm -rf DAPARdata.buildbin-libdir && mkdir DAPARdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DAPARdata.buildbin-libdir DAPARdata_1.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DAPARdata_1.21.0.zip && rm DAPARdata_1.21.0.tar.gz DAPARdata_1.21.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 29.3M  100 29.3M    0     0   106M      0 --:--:-- --:--:-- --:--:--  106M

install for i386

* installing *source* package 'DAPARdata' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DAPARdata'
    finding HTML links ... done
    DAPARdata                               html  
REDIRECT:topic	 DAPARdata -> DAPARdata.html [ SUCCESS ]
    Exp1_R25_pept                           html  
REDIRECT:topic	 Exp1_R25_pept -> Exp1_R25_pept.html [ SUCCESS ]
    finding level-2 HTML links ... done

    Exp1_R25_prot                           html  
REDIRECT:topic	 Exp1_R25_prot -> Exp1_R25_prot.html [ SUCCESS ]
    Exp1_R2_pept                            html  
REDIRECT:topic	 Exp1_R2_pept -> Exp1_R2_pept.html [ SUCCESS ]
    Exp1_R2_prot                            html  
REDIRECT:topic	 Exp1_R2_prot -> Exp1_R2_prot.html [ SUCCESS ]
    Exp2_R100_pept                          html  
REDIRECT:topic	 Exp2_R100_pept -> Exp2_R100_pept.html [ SUCCESS ]
    Exp2_R100_prot                          html  
REDIRECT:topic	 Exp2_R100_prot -> Exp2_R100_prot.html [ SUCCESS ]
    Exp2_R10_pept                           html  
REDIRECT:topic	 Exp2_R10_pept -> Exp2_R10_pept.html [ SUCCESS ]
    Exp2_R10_prot                           html  
REDIRECT:topic	 Exp2_R10_prot -> Exp2_R10_prot.html [ SUCCESS ]
    Exp2_R2_pept                            html  
REDIRECT:topic	 Exp2_R2_pept -> Exp2_R2_pept.html [ SUCCESS ]
    Exp2_R2_prot                            html  
REDIRECT:topic	 Exp2_R2_prot -> Exp2_R2_prot.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DAPARdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DAPARdata' as DAPARdata_1.21.0.zip
* DONE (DAPARdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'DAPARdata' successfully unpacked and MD5 sums checked

Tests output


Example timings

DAPARdata.Rcheck/examples_i386/DAPARdata-Ex.timings

nameusersystemelapsed
DAPARdata0.000.000.01

DAPARdata.Rcheck/examples_x64/DAPARdata-Ex.timings

nameusersystemelapsed
DAPARdata0.020.000.02