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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CopyNeutralIMA.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings CopyNeutralIMA_1.9.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/CopyNeutralIMA.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CopyNeutralIMA/DESCRIPTION' ... OK
* this is package 'CopyNeutralIMA' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CopyNeutralIMA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
getCopyNeutralRGSet 39.19   1.45    43.8
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
getCopyNeutralRGSet 39.31   1.58   43.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/CopyNeutralIMA_1.9.0.tar.gz && rm -rf CopyNeutralIMA.buildbin-libdir && mkdir CopyNeutralIMA.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNeutralIMA.buildbin-libdir CopyNeutralIMA_1.9.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CopyNeutralIMA_1.9.0.zip && rm CopyNeutralIMA_1.9.0.tar.gz CopyNeutralIMA_1.9.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  115k  100  115k    0     0  2307k      0 --:--:-- --:--:-- --:--:-- 2307k

install for i386

* installing *source* package 'CopyNeutralIMA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: CopyNeutralIMA
*** installing help indices
  converting help for package 'CopyNeutralIMA'
    finding HTML links ... done
    CopyNeutralIMA-package                  html  
REDIRECT:topic	 CopyNeutralIMA -> CopyNeutralIMA-package.html [ SUCCESS ]
REDIRECT:topic	 CopyNeutralIMA-package -> CopyNeutralIMA-package.html [ SUCCESS ]
    getCopyNeutralRGSet                     html  
REDIRECT:topic	 getCopyNeutralRGSet -> getCopyNeutralRGSet.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CopyNeutralIMA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CopyNeutralIMA' as CopyNeutralIMA_1.9.0.zip
* DONE (CopyNeutralIMA)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'CopyNeutralIMA' successfully unpacked and MD5 sums checked