Back to Multiple platform build/check report for BioC 3.13 experimental data
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for ChimpHumanBrainData on riesling1

This page was generated on 2021-01-18 15:58:46 -0500 (Mon, 18 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE ChimpHumanBrainData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 58/385HostnameOS / ArchINSTALLBUILDCHECK
ChimpHumanBrainData 1.29.0
Sean Davis
Snapshot Date: 2021-01-18 09:00:15 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/ChimpHumanBrainData
Branch: master
Last Commit: c86db6f
Last Changed Date: 2020-10-27 10:07:29 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: ChimpHumanBrainData
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChimpHumanBrainData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChimpHumanBrainData_1.29.0.tar.gz
StartedAt: 2021-01-18 11:14:45 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 11:15:22 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 37.0 seconds
RetCode: 0
Status:  OK  
CheckDir: ChimpHumanBrainData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChimpHumanBrainData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChimpHumanBrainData_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ChimpHumanBrainData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChimpHumanBrainData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChimpHumanBrainData' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChimpHumanBrainData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 64.6Mb
  sub-directories of 1Mb or more:
    extdata  64.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
ChimpHumanBrainData-package 5.15   0.08    5.23
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/ChimpHumanBrainData.Rcheck/00check.log'
for details.



Installation output

ChimpHumanBrainData.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ChimpHumanBrainData_1.29.0.tar.gz && rm -rf ChimpHumanBrainData.buildbin-libdir && mkdir ChimpHumanBrainData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChimpHumanBrainData.buildbin-libdir ChimpHumanBrainData_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChimpHumanBrainData_1.29.0.zip && rm ChimpHumanBrainData_1.29.0.tar.gz ChimpHumanBrainData_1.29.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 64.5M  100 64.5M    0     0   102M      0 --:--:-- --:--:-- --:--:--  102M

install for i386

* installing *source* package 'ChimpHumanBrainData' ...
** using staged installation
** inst
** help
*** installing help indices
  converting help for package 'ChimpHumanBrainData'
    finding HTML links ... done
    ChimpHumanBrainData-package             html  
REDIRECT:topic	 ChimpHumanBrainData-package -> ChimpHumanBrainData-package.html [ SUCCESS ]
REDIRECT:topic	 ChimpHumanBrainData -> ChimpHumanBrainData-package.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChimpHumanBrainData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChimpHumanBrainData' as ChimpHumanBrainData_1.29.0.zip
* DONE (ChimpHumanBrainData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ChimpHumanBrainData' successfully unpacked and MD5 sums checked

Tests output


Example timings

ChimpHumanBrainData.Rcheck/examples_i386/ChimpHumanBrainData-Ex.timings

nameusersystemelapsed
ChimpHumanBrainData-package5.150.085.23

ChimpHumanBrainData.Rcheck/examples_x64/ChimpHumanBrainData-Ex.timings

nameusersystemelapsed
ChimpHumanBrainData-package4.650.074.72