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CHECK report for ChIC.data on riesling1

This page was generated on 2021-01-11 15:59:29 -0500 (Mon, 11 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE ChIC.data PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 57/385HostnameOS / ArchINSTALLBUILDCHECK
ChIC.data 1.11.0
Carmen Maria Livi
Snapshot Date: 2021-01-11 09:00:09 -0500 (Mon, 11 Jan 2021)
URL: https://git.bioconductor.org/packages/ChIC.data
Branch: master
Last Commit: 3345c49
Last Changed Date: 2020-10-27 10:26:51 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: ChIC.data
Version: 1.11.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChIC.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChIC.data_1.11.0.tar.gz
StartedAt: 2021-01-11 11:15:56 -0500 (Mon, 11 Jan 2021)
EndedAt: 2021-01-11 11:17:08 -0500 (Mon, 11 Jan 2021)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ChIC.data.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChIC.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChIC.data_1.11.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ChIC.data.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChIC.data/DESCRIPTION' ... OK
* this is package 'ChIC.data' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChIC.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 46.4Mb
  sub-directories of 1Mb or more:
    data     30.4Mb
    extdata  15.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/ChIC.data.Rcheck/00check.log'
for details.



Installation output

ChIC.data.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ChIC.data_1.11.0.tar.gz && rm -rf ChIC.data.buildbin-libdir && mkdir ChIC.data.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIC.data.buildbin-libdir ChIC.data_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChIC.data_1.11.0.zip && rm ChIC.data_1.11.0.tar.gz ChIC.data_1.11.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 10 47.9M   10 5387k    0     0  7831k      0  0:00:06 --:--:--  0:00:06 7819k
100 47.9M  100 47.9M    0     0  35.2M      0  0:00:01  0:00:01 --:--:-- 35.2M

install for i386

* installing *source* package 'ChIC.data' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIC.data'
    finding HTML links ... done
    chipSubset                              html  
REDIRECT:topic	 chipSubset -> chipSubset.html [ SUCCESS ]
    classesDefList                          html  
REDIRECT:topic	 classesDefList -> classesDefList.html [ SUCCESS ]
    compendium_db                           html  
REDIRECT:topic	 compendium_db -> compendium_db.html [ SUCCESS ]
    compendium_db_tf                        html  
REDIRECT:topic	 compendium_db_tf -> compendium_db_tf.html [ SUCCESS ]
    compendium_profiles                     html  
REDIRECT:topic	 compendium_profiles -> compendium_profiles.html [ SUCCESS ]
    compendium_profiles_TF                  html  
REDIRECT:topic	 compendium_profiles_TF -> compendium_profiles_TF.html [ SUCCESS ]
    crossvalues_Chip                        html  
REDIRECT:topic	 crossvalues_Chip -> crossvalues_Chip.html [ SUCCESS ]
    dm3_chrom_info                          html  
REDIRECT:topic	 dm3_chrom_info -> dm3_chrom_info.html [ SUCCESS ]
    dm3_refseq_genes_filtered_granges       html  
REDIRECT:topic	 dm3_refseq_genes_filtered_granges -> dm3_refseq_genes_filtered_granges.html [ SUCCESS ]
    hg19_chrom_info                         html  
REDIRECT:topic	 hg19_chrom_info -> hg19_chrom_info.html [ SUCCESS ]
    hg19_refseq_genes_filtered_granges      html  
REDIRECT:topic	 hg19_refseq_genes_filtered_granges -> hg19_refseq_genes_filtered_granges.html [ SUCCESS ]
    hg38_chrom_info                         html  
REDIRECT:topic	 hg38_chrom_info -> hg38_chrom_info.html [ SUCCESS ]
    hg38_refseq_genes_filtered_granges      html  
REDIRECT:topic	 hg38_refseq_genes_filtered_granges -> hg38_refseq_genes_filtered_granges.html [ SUCCESS ]
    inputSubset                             html  
REDIRECT:topic	 inputSubset -> inputSubset.html [ SUCCESS ]
    mm10_chrom_info                         html  
REDIRECT:topic	 mm10_chrom_info -> mm10_chrom_info.html [ SUCCESS ]
    mm10_refseq_genes_filtered_granges      html  
REDIRECT:topic	 mm10_refseq_genes_filtered_granges -> mm10_refseq_genes_filtered_granges.html [ SUCCESS ]
    mm9_chrom_info                          html  
REDIRECT:topic	 mm9_chrom_info -> mm9_chrom_info.html [ SUCCESS ]
    mm9_refseq_genes_filtered_granges       html  
REDIRECT:topic	 mm9_refseq_genes_filtered_granges -> mm9_refseq_genes_filtered_granges.html [ SUCCESS ]
    rf_models                               html  
REDIRECT:topic	 rf_models -> rf_models.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIC.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIC.data' as ChIC.data_1.11.0.zip
* DONE (ChIC.data)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ChIC.data' successfully unpacked and MD5 sums checked

Tests output


Example timings