Yuan Tian
| Snapshot Date: 2021-01-14 09:00:13 -0500 (Thu, 14 Jan 2021) |
| URL: https://git.bioconductor.org/packages/ChAMPdata |
| Branch: master |
| Last Commit: 9095bbe |
| Last Changed Date: 2020-10-27 10:05:58 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-14 15:59:07 -0500 (Thu, 14 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE ChAMPdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 56/385 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| ChAMPdata 2.23.0 Yuan Tian
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: ChAMPdata |
| Version: 2.23.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChAMPdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChAMPdata_2.23.0.tar.gz |
| StartedAt: 2021-01-14 11:09:49 -0500 (Thu, 14 Jan 2021) |
| EndedAt: 2021-01-14 11:14:45 -0500 (Thu, 14 Jan 2021) |
| EllapsedTime: 295.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ChAMPdata.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChAMPdata.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ChAMPdata_2.23.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ChAMPdata.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChAMPdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChAMPdata' version '2.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChAMPdata' can be installed ... OK
* checking installed package size ... NOTE
installed size is 743.1Mb
sub-directories of 1Mb or more:
data 619.2Mb
extdata 123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Error loading dataset 'bloodCtl':
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'nrow': no slot of name "elementMetadata" for this object of class "RGChannelSetExtended"
Error loading dataset 'myLoad':
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'nrow': no slot of name "elementMetadata" for this object of class "MethylSet"
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChAMPdata-package 23.19 0.56 23.75
testDataSet 8.17 0.31 8.48
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChAMPdata-package 21.38 0.53 21.91
testDataSet 6.81 0.29 7.10
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/ChAMPdata.Rcheck/00check.log'
for details.
ChAMPdata.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ChAMPdata_2.23.0.tar.gz && rm -rf ChAMPdata.buildbin-libdir && mkdir ChAMPdata.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChAMPdata.buildbin-libdir ChAMPdata_2.23.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChAMPdata_2.23.0.zip && rm ChAMPdata_2.23.0.tar.gz ChAMPdata_2.23.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 679M 6 46.4M 0 0 76.1M 0 0:00:08 --:--:-- 0:00:08 75.9M
22 679M 22 154M 0 0 95.8M 0 0:00:07 0:00:01 0:00:06 95.7M
39 679M 39 265M 0 0 101M 0 0:00:06 0:00:02 0:00:04 101M
52 679M 52 354M 0 0 98.0M 0 0:00:06 0:00:03 0:00:03 98.0M
66 679M 66 454M 0 0 98.5M 0 0:00:06 0:00:04 0:00:02 98.5M
83 679M 83 567M 0 0 101M 0 0:00:06 0:00:05 0:00:01 104M
97 679M 97 665M 0 0 100M 0 0:00:06 0:00:06 --:--:-- 101M
100 679M 100 679M 0 0 99.3M 0 0:00:06 0:00:06 --:--:-- 97.8M
install for i386
* installing *source* package 'ChAMPdata' ...
** using staged installation
** data
** inst
** help
*** installing help indices
converting help for package 'ChAMPdata'
finding HTML links ... done
Anno450K html
REDIRECT:topic Anno450K -> Anno450K.html [ SUCCESS ]
AnnoEPIC html
REDIRECT:topic AnnoEPIC -> AnnoEPIC.html [ SUCCESS ]
CellTypeMeans27K html
REDIRECT:topic CellTypeMeans27K -> CellTypeMeans27K.html [ SUCCESS ]
CellTypeMeans450K html
REDIRECT:topic CellTypeMeans450K -> CellTypeMeans450K.html [ SUCCESS ]
ChAMPdata-package html
REDIRECT:topic ChAMPdata-package -> ChAMPdata-package.html [ SUCCESS ]
REDIRECT:topic ChAMPdata -> ChAMPdata-package.html [ SUCCESS ]
ControlProbes450K html
REDIRECT:topic ControlProbes450K -> ControlProbes450K.html [ SUCCESS ]
ControlProbesEPIC html
REDIRECT:topic ControlProbesEPIC -> ControlProbesEPIC.html [ SUCCESS ]
EPIC.manifest.hg19 html
REDIRECT:topic EPIC.manifest.hg19 -> EPIC.manifest.hg19.html [ SUCCESS ]
EPIC.manifest.pop.hg19 html
REDIRECT:topic EPIC.manifest.pop.hg19 -> EPIC.manifest.pop.hg19.html [ SUCCESS ]
EPICSimData html
REDIRECT:topic EPICSimData -> EPICSimData.html [ SUCCESS ]
MatchGeneName html
REDIRECT:topic MatchGeneName -> MatchGeneName.html [ SUCCESS ]
PathwayList html
REDIRECT:topic PathwayList -> PathwayList.html [ SUCCESS ]
bloodCtl html
REDIRECT:topic bloodCtl -> bloodCtl.html [ SUCCESS ]
hm450.manifest.hg19 html
REDIRECT:topic hm450.manifest.hg19 -> hm450.manifest.hg19.html [ SUCCESS ]
hm450.manifest.pop.hg19 html
REDIRECT:topic hm450.manifest.pop.hg19 -> hm450.manifest.pop.hg19.html [ SUCCESS ]
hprdAsigH html
REDIRECT:topic hprdAsigH -> hprdAsigH.html [ SUCCESS ]
illumina450Gr html
REDIRECT:topic illumina450Gr -> illumina450Gr.html [ SUCCESS ]
illuminaEPICGr html
REDIRECT:topic illuminaEPICGr -> illuminaEPICGr.html [ SUCCESS ]
multi.hit html
REDIRECT:topic multi.hit -> multi.hit.html [ SUCCESS ]
probe.features html
REDIRECT:topic probe.features -> probe.features.html [ SUCCESS ]
probe.features.epic html
REDIRECT:topic probe.features.epic -> probe.features.epic.html [ SUCCESS ]
probeInfoALL.epic.lv html
REDIRECT:topic probeInfoALL.epic.lv -> probeInfoALL.epic.lv.html [ SUCCESS ]
probeInfoALL.lv html
REDIRECT:topic probeInfoALL.lv -> probeInfoALL.lv.html [ SUCCESS ]
snp.hit html
REDIRECT:topic snp.hit -> snp.hit.html [ SUCCESS ]
testDataSet html
REDIRECT:topic testDataSet -> testDataSet.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChAMPdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChAMPdata' as ChAMPdata_2.23.0.zip
* DONE (ChAMPdata)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ChAMPdata' successfully unpacked and MD5 sums checked
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ChAMPdata.Rcheck/examples_i386/ChAMPdata-Ex.timings
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ChAMPdata.Rcheck/examples_x64/ChAMPdata-Ex.timings
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