Back to Multiple platform build/check report for BioC 3.13 experimental data
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for COPDSexualDimorphism.data on riesling1

This page was generated on 2021-01-21 16:01:26 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE COPDSexualDimorphism.data PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 74/386HostnameOS / ArchINSTALLBUILDCHECK
COPDSexualDimorphism.data 1.27.0
J Fah Sathirapongsasuti
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/COPDSexualDimorphism.data
Branch: master
Last Commit: d59afa6
Last Changed Date: 2020-10-27 10:08:40 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ WARNINGS ]

Summary

Package: COPDSexualDimorphism.data
Version: 1.27.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:COPDSexualDimorphism.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings COPDSexualDimorphism.data_1.27.0.tar.gz
StartedAt: 2021-01-21 11:16:30 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:17:34 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 64.7 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: COPDSexualDimorphism.data.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:COPDSexualDimorphism.data.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings COPDSexualDimorphism.data_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/COPDSexualDimorphism.data.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'COPDSexualDimorphism.data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'COPDSexualDimorphism.data' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'COPDSexualDimorphism.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.4Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  lgrc.eqtl.rda     1.3Mb    655Kb       xz
  lgrc.expr.rda    11.0Mb    7.6Mb       xz
  lgrc.genes.rda    640Kb    367Kb       xz
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log'
for details.



Installation output

COPDSexualDimorphism.data.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/COPDSexualDimorphism.data_1.27.0.tar.gz && rm -rf COPDSexualDimorphism.data.buildbin-libdir && mkdir COPDSexualDimorphism.data.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COPDSexualDimorphism.data.buildbin-libdir COPDSexualDimorphism.data_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COPDSexualDimorphism.data_1.27.0.zip && rm COPDSexualDimorphism.data_1.27.0.tar.gz COPDSexualDimorphism.data_1.27.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 34.1M    0  1213    0     0   1537      0  6:28:47 --:--:--  6:28:47  1535
  0 34.1M    0  158k    0     0   103k      0  0:05:39  0:00:01  0:05:38  103k
  8 34.1M    8 2835k    0     0  1088k      0  0:00:32  0:00:02  0:00:30 1088k
 12 34.1M   12 4335k    0     0  1222k      0  0:00:28  0:00:03  0:00:25 1222k
 16 34.1M   16 5799k    0     0  1226k      0  0:00:28  0:00:04  0:00:24 1226k
 19 34.1M   19 6656k    0     0  1157k      0  0:00:30  0:00:05  0:00:25 1340k
 22 34.1M   22 7743k    0     0  1100k      0  0:00:31  0:00:07  0:00:24 1377k
 26 34.1M   26 9109k    0     0  1158k      0  0:00:30  0:00:07  0:00:23 1193k
 27 34.1M   27 9605k    0     0  1118k      0  0:00:31  0:00:08  0:00:23 1045k
 29 34.1M   29 10.1M    0     0  1040k      0  0:00:33  0:00:09  0:00:24  871k
 29 34.1M   29 10.1M    0     0   972k      0  0:00:35  0:00:10  0:00:25  759k
 32 34.1M   32 11.0M    0     0   920k      0  0:00:38  0:00:12  0:00:26  680k
 32 34.1M   32 11.0M    0     0   853k      0  0:00:41  0:00:13  0:00:28  408k
 32 34.1M   32 11.2M    0     0   812k      0  0:00:43  0:00:14  0:00:29  339k
 32 34.1M   32 11.2M    0     0   770k      0  0:00:45  0:00:14  0:00:31  229k
 36 34.1M   36 12.5M    0     0   809k      0  0:00:43  0:00:15  0:00:28  466k
 40 34.1M   40 13.8M    0     0   818k      0  0:00:42  0:00:17  0:00:25  570k
 40 34.1M   40 13.8M    0     0   794k      0  0:00:44  0:00:17  0:00:27  624k
 40 34.1M   40 13.8M    0     0   754k      0  0:00:46  0:00:18  0:00:28  578k
 44 34.1M   44 15.2M    0     0   785k      0  0:00:44  0:00:19  0:00:25  828k
 48 34.1M   48 16.5M    0     0   807k      0  0:00:43  0:00:20  0:00:23  801k
 52 34.1M   52 17.9M    0     0   827k      0  0:00:42  0:00:22  0:00:20  857k
 52 34.1M   52 17.9M    0     0   801k      0  0:00:43  0:00:22  0:00:21  826k
 60 34.1M   60 20.5M    0     0   880k      0  0:00:39  0:00:23  0:00:16 1346k
100 34.1M  100 34.1M    0     0  1434k      0  0:00:24  0:00:24 --:--:-- 4241k

install for i386

* installing *source* package 'COPDSexualDimorphism.data' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'COPDSexualDimorphism.data'
    finding HTML links ... done
    COPDSexualDimorphism.data-package       html  
REDIRECT:topic	 COPDSexualDimorphism-package -> COPDSexualDimorphism.data-package.html [ SUCCESS ]
REDIRECT:topic	 COPDSexualDimorphism -> COPDSexualDimorphism.data-package.html [ SUCCESS ]
REDIRECT:file	 COPDSexualDimorphism.data-package.html -> COPDSexualDimorphism.data-package.html [ SUCCESS ]
    lgrc.expr                               html  
REDIRECT:topic	 lgrc.expr -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 lgrc.expr.meta -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 lgrc.methp -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 lgrc.meta -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 lgrc.genes -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 lgrc.eqtl -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 expr -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 expr.meta -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 methp -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 meta -> lgrc.expr.html [ SUCCESS ]
REDIRECT:topic	 eqtl -> lgrc.expr.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'COPDSexualDimorphism.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COPDSexualDimorphism.data' as COPDSexualDimorphism.data_1.27.0.zip
* DONE (COPDSexualDimorphism.data)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'COPDSexualDimorphism.data' successfully unpacked and MD5 sums checked

Tests output


Example timings

COPDSexualDimorphism.data.Rcheck/examples_i386/COPDSexualDimorphism.data-Ex.timings

nameusersystemelapsed
COPDSexualDimorphism.data-package0.190.020.20
lgrc.expr0.420.000.42

COPDSexualDimorphism.data.Rcheck/examples_x64/COPDSexualDimorphism.data-Ex.timings

nameusersystemelapsed
COPDSexualDimorphism.data-package0.170.020.19
lgrc.expr0.350.050.39