Charles Warden
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/COHCAPanno |
| Branch: master |
| Last Commit: b771882 |
| Last Changed Date: 2020-10-27 10:07:36 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:26 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE COHCAPanno PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 70/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| COHCAPanno 1.27.0 Charles Warden
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: COHCAPanno |
| Version: 1.27.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:COHCAPanno.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings COHCAPanno_1.27.0.tar.gz |
| StartedAt: 2021-01-21 11:16:13 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:16:31 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 18.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: COHCAPanno.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:COHCAPanno.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings COHCAPanno_1.27.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/COHCAPanno.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'COHCAPanno/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'COHCAPanno' version '1.27.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'COHCAPanno' can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
data 9.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/COHCAPanno.Rcheck/00check.log'
for details.
COHCAPanno.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/COHCAPanno_1.27.0.tar.gz && rm -rf COHCAPanno.buildbin-libdir && mkdir COHCAPanno.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COHCAPanno.buildbin-libdir COHCAPanno_1.27.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COHCAPanno_1.27.0.zip && rm COHCAPanno_1.27.0.tar.gz COHCAPanno_1.27.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 9475k 0 1215 0 0 9067 0 0:17:50 --:--:-- 0:17:50 9000
6 9475k 6 635k 0 0 535k 0 0:00:17 0:00:01 0:00:16 535k
21 9475k 21 2020k 0 0 942k 0 0:00:10 0:00:02 0:00:08 942k
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79 9475k 79 7549k 0 0 798k 0 0:00:11 0:00:09 0:00:02 763k
100 9475k 100 9475k 0 0 981k 0 0:00:09 0:00:09 --:--:-- 974k
install for i386
* installing *source* package 'COHCAPanno' ...
** using staged installation
** data
** help
*** installing help indices
converting help for package 'COHCAPanno'
finding HTML links ... done
COHCAP.27k html
REDIRECT:topic COHCAP.27k -> COHCAP.27k.html [ SUCCESS ]
COHCAP.450k.HMM html
REDIRECT:topic COHCAP.450k.HMM -> COHCAP.450k.HMM.html [ SUCCESS ]
COHCAP.450k.UCSC html
REDIRECT:topic COHCAP.450k.UCSC -> COHCAP.450k.UCSC.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'COHCAPanno' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COHCAPanno' as COHCAPanno_1.27.0.zip
* DONE (COHCAPanno)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'COHCAPanno' successfully unpacked and MD5 sums checked