Malgorzata Oles
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/BloodCancerMultiOmics2017 |
| Branch: master |
| Last Commit: 7d60da4 |
| Last Changed Date: 2020-10-27 10:26:12 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:25 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE BloodCancerMultiOmics2017 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 31/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| BloodCancerMultiOmics2017 1.11.0 Malgorzata Oles
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] |
| Package: BloodCancerMultiOmics2017 |
| Version: 1.11.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BloodCancerMultiOmics2017.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings BloodCancerMultiOmics2017_1.11.0.tar.gz |
| StartedAt: 2021-01-21 11:12:33 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:15:32 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 179.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BloodCancerMultiOmics2017.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BloodCancerMultiOmics2017.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings BloodCancerMultiOmics2017_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/BloodCancerMultiOmics2017.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BloodCancerMultiOmics2017/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BloodCancerMultiOmics2017' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BloodCancerMultiOmics2017' can be installed ... OK
* checking installed package size ... NOTE
installed size is 75.4Mb
sub-directories of 1Mb or more:
data 66.4Mb
extdata 8.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
survplot: no visible binding for global variable 's'
survplot: no visible binding for global variable 'cox'
Undefined global functions or variables:
cox s
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/BloodCancerMultiOmics2017.Rcheck/00check.log'
for details.
BloodCancerMultiOmics2017.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/BloodCancerMultiOmics2017_1.11.0.tar.gz && rm -rf BloodCancerMultiOmics2017.buildbin-libdir && mkdir BloodCancerMultiOmics2017.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BloodCancerMultiOmics2017.buildbin-libdir BloodCancerMultiOmics2017_1.11.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BloodCancerMultiOmics2017_1.11.0.zip && rm BloodCancerMultiOmics2017_1.11.0.tar.gz BloodCancerMultiOmics2017_1.11.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
18 36.0M 18 6954k 0 0 25.7M 0 0:00:01 --:--:-- 0:00:01 25.6M
100 36.0M 100 36.0M 0 0 59.5M 0 --:--:-- --:--:-- --:--:-- 59.4M
install for i386
* installing *source* package 'BloodCancerMultiOmics2017' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BloodCancerMultiOmics2017'
finding HTML links ... done
addNrisk html
REDIRECT:topic addNrisk -> addNrisk.html [ SUCCESS ]
col2hex html
REDIRECT:topic col2hex -> col2hex.html [ SUCCESS ]
data-conctab html
REDIRECT:topic conctab -> data-conctab.html [ SUCCESS ]
REDIRECT:file data-conctab.html -> data-conctab.html [ SUCCESS ]
data-cytokineViab html
REDIRECT:topic cytokineViab -> data-cytokineViab.html [ SUCCESS ]
REDIRECT:file data-cytokineViab.html -> data-cytokineViab.html [ SUCCESS ]
data-day23rep html
REDIRECT:topic day23rep -> data-day23rep.html [ SUCCESS ]
REDIRECT:file data-day23rep.html -> data-day23rep.html [ SUCCESS ]
finding level-2 HTML links ... done
data-dds html
REDIRECT:topic dds -> data-dds.html [ SUCCESS ]
REDIRECT:file data-dds.html -> data-dds.html [ SUCCESS ]
data-drpar html
REDIRECT:topic drpar -> data-drpar.html [ SUCCESS ]
REDIRECT:file data-drpar.html -> data-drpar.html [ SUCCESS ]
data-drugs html
REDIRECT:topic drugs -> data-drugs.html [ SUCCESS ]
REDIRECT:file data-drugs.html -> data-drugs.html [ SUCCESS ]
data-exprTreat html
REDIRECT:topic exprTreat -> data-exprTreat.html [ SUCCESS ]
REDIRECT:file data-exprTreat.html -> data-exprTreat.html [ SUCCESS ]
data-lpdAll html
REDIRECT:topic lpdAll -> data-lpdAll.html [ SUCCESS ]
REDIRECT:file data-lpdAll.html -> data-lpdAll.html [ SUCCESS ]
data-methData html
REDIRECT:topic methData -> data-methData.html [ SUCCESS ]
REDIRECT:file data-methData.html -> data-methData.html [ SUCCESS ]
data-mutCOM html
REDIRECT:topic mutCOM -> data-mutCOM.html [ SUCCESS ]
REDIRECT:file data-mutCOM.html -> data-mutCOM.html [ SUCCESS ]
data-patmeta html
REDIRECT:topic patmeta -> data-patmeta.html [ SUCCESS ]
REDIRECT:file data-patmeta.html -> data-patmeta.html [ SUCCESS ]
data-validateExp html
REDIRECT:topic validateExp -> data-validateExp.html [ SUCCESS ]
REDIRECT:file data-validateExp.html -> data-validateExp.html [ SUCCESS ]
deckel html
REDIRECT:topic deckel -> deckel.html [ SUCCESS ]
defineResponseGroups html
REDIRECT:topic defineResponseGroups -> defineResponseGroups.html [ SUCCESS ]
exp10div html
REDIRECT:topic exp10div -> exp10div.html [ SUCCESS ]
giveDrugLabel html
REDIRECT:topic giveDrugLabel -> giveDrugLabel.html [ SUCCESS ]
log10div html
REDIRECT:topic log10div -> log10div.html [ SUCCESS ]
meltWholeDF html
REDIRECT:topic meltWholeDF -> meltWholeDF.html [ SUCCESS ]
moround html
REDIRECT:topic moround -> moround.html [ SUCCESS ]
nrisk html
REDIRECT:topic nrisk -> nrisk.html [ SUCCESS ]
percentAxisScale html
REDIRECT:topic percentAxisScale -> percentAxisScale.html [ SUCCESS ]
pheatmapwh html
REDIRECT:topic pheatmapwh -> pheatmapwh.html [ SUCCESS ]
safeMatch html
REDIRECT:topic safeMatch -> safeMatch.html [ SUCCESS ]
scientific_10 html
REDIRECT:topic scientific_10 -> scientific_10.html [ SUCCESS ]
smunlist html
REDIRECT:topic smunlist -> smunlist.html [ SUCCESS ]
stripConc html
REDIRECT:topic stripConc -> stripConc.html [ SUCCESS ]
survplot html
REDIRECT:topic survplot -> survplot.html [ SUCCESS ]
toCaps html
REDIRECT:topic toCaps -> toCaps.html [ SUCCESS ]
whichInGrob html
REDIRECT:topic whichInGrob -> whichInGrob.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BloodCancerMultiOmics2017' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BloodCancerMultiOmics2017' as BloodCancerMultiOmics2017_1.11.0.zip
* DONE (BloodCancerMultiOmics2017)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'BloodCancerMultiOmics2017' successfully unpacked and MD5 sums checked
|
BloodCancerMultiOmics2017.Rcheck/examples_i386/BloodCancerMultiOmics2017-Ex.timings
|
BloodCancerMultiOmics2017.Rcheck/examples_x64/BloodCancerMultiOmics2017-Ex.timings
|