Aaron Taudt
| Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/AneuFinderData |
| Branch: master |
| Last Commit: 31d0d3f |
| Last Changed Date: 2020-10-27 10:18:25 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-01-21 16:01:24 -0500 (Thu, 21 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE AneuFinderData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 15/386 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| AneuFinderData 1.19.0 Aaron Taudt
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ WARNINGS ] |
| Package: AneuFinderData |
| Version: 1.19.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AneuFinderData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AneuFinderData_1.19.0.tar.gz |
| StartedAt: 2021-01-21 11:11:23 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 11:11:42 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 18.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: AneuFinderData.Rcheck |
| Warnings: 1 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AneuFinderData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AneuFinderData_1.19.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/AneuFinderData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AneuFinderData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AneuFinderData' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AneuFinderData' can be installed ... OK
* checking installed package size ... NOTE
installed size is 60.2Mb
sub-directories of 1Mb or more:
extdata 60.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
'AneuFinderData.Rnw'
Files named as vignettes but with no recognized vignette engine:
'vignettes/AneuFinderData.Rnw'
(Is a VignetteBuilder field missing?)
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'D:/biocbuild/bbs-3.13-data-experiment/meat/AneuFinderData.Rcheck/00check.log'
for details.
AneuFinderData.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/AneuFinderData_1.19.0.tar.gz && rm -rf AneuFinderData.buildbin-libdir && mkdir AneuFinderData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AneuFinderData.buildbin-libdir AneuFinderData_1.19.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AneuFinderData_1.19.0.zip && rm AneuFinderData_1.19.0.tar.gz AneuFinderData_1.19.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
24 57.0M 24 13.7M 0 0 24.4M 0 0:00:02 --:--:-- 0:00:02 24.4M
100 57.0M 100 57.0M 0 0 54.6M 0 0:00:01 0:00:01 --:--:-- 54.6M
install for i386
* installing *source* package 'AneuFinderData' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AneuFinderData'
finding HTML links ... done
BB150803_IV_074 html
REDIRECT:topic BB150803_IV_074 -> BB150803_IV_074.html [ SUCCESS ]
REDIRECT:topic bam -> BB150803_IV_074.html [ SUCCESS ]
KK150311_VI_07 html
REDIRECT:topic KK150311_VI_07 -> KK150311_VI_07.html [ SUCCESS ]
REDIRECT:topic bed -> KK150311_VI_07.html [ SUCCESS ]
hg19_diploid html
REDIRECT:topic diploid -> hg19_diploid.html [ SUCCESS ]
REDIRECT:topic hg19_diploid -> hg19_diploid.html [ SUCCESS ]
metastasis_liver html
REDIRECT:topic liver -> metastasis_liver.html [ SUCCESS ]
REDIRECT:topic metastasis -> metastasis_liver.html [ SUCCESS ]
REDIRECT:topic metastasis_liver -> metastasis_liver.html [ SUCCESS ]
primary_lung html
REDIRECT:topic lung -> primary_lung.html [ SUCCESS ]
REDIRECT:topic primary -> primary_lung.html [ SUCCESS ]
REDIRECT:topic primary_lung -> primary_lung.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AneuFinderData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AneuFinderData' as AneuFinderData_1.19.0.zip
* DONE (AneuFinderData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'AneuFinderData' successfully unpacked and MD5 sums checked