Back to Multiple platform build/check report for BioC 3.13 experimental data
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for Affymoe4302Expr on riesling1

This page was generated on 2021-01-21 16:01:24 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE Affymoe4302Expr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 9/386HostnameOS / ArchINSTALLBUILDCHECK
Affymoe4302Expr 1.29.0
Zhicheng Ji
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/Affymoe4302Expr
Branch: master
Last Commit: ddab6bb
Last Changed Date: 2020-10-27 10:07:56 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: Affymoe4302Expr
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Affymoe4302Expr.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Affymoe4302Expr_1.29.0.tar.gz
StartedAt: 2021-01-21 11:11:23 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:12:11 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 47.4 seconds
RetCode: 0
Status:  OK  
CheckDir: Affymoe4302Expr.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Affymoe4302Expr.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Affymoe4302Expr_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/Affymoe4302Expr.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Affymoe4302Expr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Affymoe4302Expr' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Affymoe4302Expr' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 421.1Mb
  sub-directories of 1Mb or more:
    extdata  420.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/Affymoe4302Expr.Rcheck/00check.log'
for details.



Installation output

Affymoe4302Expr.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/Affymoe4302Expr_1.29.0.tar.gz && rm -rf Affymoe4302Expr.buildbin-libdir && mkdir Affymoe4302Expr.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Affymoe4302Expr.buildbin-libdir Affymoe4302Expr_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Affymoe4302Expr_1.29.0.zip && rm Affymoe4302Expr_1.29.0.tar.gz Affymoe4302Expr_1.29.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  417M    0  1211    0     0  22849      0  5:19:24 --:--:--  5:19:24 22425
 14  417M   14 62.1M    0     0  59.8M      0  0:00:06  0:00:01  0:00:05 59.7M
 28  417M   28  117M    0     0  57.7M      0  0:00:07  0:00:02  0:00:05 57.7M
 49  417M   49  205M    0     0  67.5M      0  0:00:06  0:00:03  0:00:03 67.5M
 62  417M   62  261M    0     0  64.6M      0  0:00:06  0:00:04  0:00:02 64.6M
 75  417M   75  316M    0     0  62.8M      0  0:00:06  0:00:05  0:00:01 63.5M
 83  417M   83  348M    0     0  57.7M      0  0:00:07  0:00:06  0:00:01 57.2M
 98  417M   98  412M    0     0  58.2M      0  0:00:07  0:00:07 --:--:-- 58.4M
100  417M  100  417M    0     0  58.3M      0  0:00:07  0:00:07 --:--:-- 51.5M

install for i386

* installing *source* package 'Affymoe4302Expr' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'Affymoe4302Expr'
    finding HTML links ... done
    Affymoe4302Expr-package                 html  
REDIRECT:topic	 Affymoe4302Expr-package -> Affymoe4302Expr-package.html [ SUCCESS ]
    Affymoe4302Expr                         html  
REDIRECT:topic	 Affymoe4302Expr -> Affymoe4302Expr.html [ SUCCESS ]
    Affymoe4302Exprtab                      html  
REDIRECT:topic	 Affymoe4302Exprtab -> Affymoe4302Exprtab.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Affymoe4302Expr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Affymoe4302Expr' as Affymoe4302Expr_1.29.0.zip
* DONE (Affymoe4302Expr)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'Affymoe4302Expr' successfully unpacked and MD5 sums checked

Tests output


Example timings

Affymoe4302Expr.Rcheck/examples_i386/Affymoe4302Expr-Ex.timings

nameusersystemelapsed
Affymoe4302Exprtab0.050.000.05

Affymoe4302Expr.Rcheck/examples_x64/Affymoe4302Expr-Ex.timings

nameusersystemelapsed
Affymoe4302Exprtab0.040.000.05