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CHECK report for Affyhgu133aExpr on riesling1

This page was generated on 2021-01-21 16:01:24 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE Affyhgu133aExpr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 6/386HostnameOS / ArchINSTALLBUILDCHECK
Affyhgu133aExpr 1.29.0
Zhicheng Ji
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/Affyhgu133aExpr
Branch: master
Last Commit: 9cbb782
Last Changed Date: 2020-10-27 10:07:40 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: Affyhgu133aExpr
Version: 1.29.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Affyhgu133aExpr.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Affyhgu133aExpr_1.29.0.tar.gz
StartedAt: 2021-01-21 11:11:23 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:12:02 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 38.9 seconds
RetCode: 0
Status:  OK  
CheckDir: Affyhgu133aExpr.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Affyhgu133aExpr.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings Affyhgu133aExpr_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/Affyhgu133aExpr.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Affyhgu133aExpr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Affyhgu133aExpr' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Affyhgu133aExpr' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 318.6Mb
  sub-directories of 1Mb or more:
    extdata  318.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/Affyhgu133aExpr.Rcheck/00check.log'
for details.



Installation output

Affyhgu133aExpr.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/Affyhgu133aExpr_1.29.0.tar.gz && rm -rf Affyhgu133aExpr.buildbin-libdir && mkdir Affyhgu133aExpr.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Affyhgu133aExpr.buildbin-libdir Affyhgu133aExpr_1.29.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Affyhgu133aExpr_1.29.0.zip && rm Affyhgu133aExpr_1.29.0.tar.gz Affyhgu133aExpr_1.29.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1  316M    1 4783k    0     0  4861k      0  0:01:06 --:--:--  0:01:06 4856k
  7  316M    7 23.4M    0     0  11.8M      0  0:00:26  0:00:01  0:00:25 11.8M
 21  316M   21 67.4M    0     0  22.0M      0  0:00:14  0:00:03  0:00:11 22.0M
 27  316M   27 87.1M    0     0  18.0M      0  0:00:17  0:00:04  0:00:13 18.0M
 29  316M   29 92.8M    0     0  18.5M      0  0:00:17  0:00:05  0:00:12 18.5M
 30  316M   30 95.8M    0     0  15.2M      0  0:00:20  0:00:06  0:00:14 17.2M
 37  316M   37  117M    0     0  16.6M      0  0:00:19  0:00:07  0:00:12 18.4M
 40  316M   40  126M    0     0  15.8M      0  0:00:19  0:00:08  0:00:11 12.0M
 50  316M   50  158M    0     0  17.5M      0  0:00:18  0:00:09  0:00:09 16.9M
 55  316M   55  174M    0     0  17.2M      0  0:00:18  0:00:10  0:00:08 15.8M
 58  316M   58  185M    0     0  16.8M      0  0:00:18  0:00:10  0:00:08 18.9M
 60  316M   60  190M    0     0  15.6M      0  0:00:20  0:00:12  0:00:08 14.2M
 73  316M   73  232M    0     0  17.8M      0  0:00:17  0:00:12  0:00:05 21.1M
 85  316M   85  269M    0     0  18.9M      0  0:00:16  0:00:14  0:00:02 21.3M
 85  316M   85  271M    0     0  17.9M      0  0:00:17  0:00:15  0:00:02 19.6M
 88  316M   88  278M    0     0  17.1M      0  0:00:18  0:00:16  0:00:02 17.6M
 90  316M   90  287M    0     0  16.9M      0  0:00:18  0:00:16  0:00:02 20.2M
 95  316M   95  302M    0     0  16.8M      0  0:00:18  0:00:17  0:00:01 13.9M
 98  316M   98  310M    0     0  16.3M      0  0:00:19  0:00:19 --:--:-- 8746k
100  316M  100  316M    0     0  16.4M      0  0:00:19  0:00:19 --:--:-- 10.7M

install for i386

* installing *source* package 'Affyhgu133aExpr' ...
** using staged installation
** data
** inst
** help
*** installing help indices
  converting help for package 'Affyhgu133aExpr'
    finding HTML links ... done
    Affyhgu133aExpr-package                 html  
REDIRECT:topic	 Affyhgu133aExpr-package -> Affyhgu133aExpr-package.html [ SUCCESS ]
    Affyhgu133aExpr                         html  
REDIRECT:topic	 Affyhgu133aExpr -> Affyhgu133aExpr.html [ SUCCESS ]
    Affyhgu133aExprtab                      html  
REDIRECT:topic	 Affyhgu133aExprtab -> Affyhgu133aExprtab.html [ SUCCESS ]
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Affyhgu133aExpr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Affyhgu133aExpr' as Affyhgu133aExpr_1.29.0.zip
* DONE (Affyhgu133aExpr)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'Affyhgu133aExpr' successfully unpacked and MD5 sums checked

Tests output


Example timings

Affyhgu133aExpr.Rcheck/examples_i386/Affyhgu133aExpr-Ex.timings

nameusersystemelapsed
Affyhgu133aExprtab0.030.000.03

Affyhgu133aExpr.Rcheck/examples_x64/Affyhgu133aExpr-Ex.timings

nameusersystemelapsed
Affyhgu133aExprtab0.030.000.03