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CHECK report for ABAData on riesling1

This page was generated on 2021-01-21 16:01:24 -0500 (Thu, 21 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE ABAData PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1/386HostnameOS / ArchINSTALLBUILDCHECK
ABAData 1.21.0
Steffi Grote
Snapshot Date: 2021-01-21 09:00:14 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/ABAData
Branch: master
Last Commit: 7550693
Last Changed Date: 2020-10-27 10:13:41 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK [ OK ]

Summary

Package: ABAData
Version: 1.21.0
Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ABAData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ABAData_1.21.0.tar.gz
StartedAt: 2021-01-21 11:11:23 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 11:12:36 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 72.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ABAData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ABAData.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ABAData_1.21.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-data-experiment/meat/ABAData.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ABAData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ABAData' version '1.21.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ABAData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 57.9Mb
  sub-directories of 1Mb or more:
    data  57.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
datasets_ABAData 10.67   0.12   10.80
ABAData-package   8.85   0.03    8.87
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
datasets_ABAData 8.17   0.22    8.39
ABAData-package  6.86   0.04    6.91
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbuild/bbs-3.13-data-experiment/meat/ABAData.Rcheck/00check.log'
for details.



Installation output

ABAData.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/data-experiment/src/contrib/ABAData_1.21.0.tar.gz && rm -rf ABAData.buildbin-libdir && mkdir ABAData.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ABAData.buildbin-libdir ABAData_1.21.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ABAData_1.21.0.zip && rm ABAData_1.21.0.tar.gz ABAData_1.21.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 57.8M    0  203k    0     0   216k      0  0:04:33 --:--:--  0:04:33  216k
  1 57.8M    1  714k    0     0   335k      0  0:02:56  0:00:02  0:02:54  335k
  3 57.8M    3 1833k    0     0   579k      0  0:01:42  0:00:03  0:01:39  579k
  5 57.8M    5 3266k    0     0   833k      0  0:01:11  0:00:03  0:01:08  833k
  7 57.8M    7 4719k    0     0   954k      0  0:01:02  0:00:04  0:00:58  954k
 10 57.8M   10 6132k    0     0  1006k      0  0:00:58  0:00:06  0:00:52 1151k
 15 57.8M   15 8972k    0     0  1301k      0  0:00:45  0:00:06  0:00:39 1732k
 82 57.8M   82 48.0M    0     0  6154k      0  0:00:09  0:00:07  0:00:02 9805k
100 57.8M  100 57.8M    0     0  7285k      0  0:00:08  0:00:08 --:--:-- 12.9M

install for i386

* installing *source* package 'ABAData' ...
** using staged installation
** data
** help
*** installing help indices
  converting help for package 'ABAData'
    finding HTML links ... done
    ABAData-package                         html  
REDIRECT:topic	 ABAData-package -> ABAData-package.html [ SUCCESS ]
REDIRECT:topic	 ABAData -> ABAData-package.html [ SUCCESS ]
    datasets_ABAData                        html  
REDIRECT:topic	 datasets_ABAData -> datasets_ABAData.html [ SUCCESS ]
REDIRECT:topic	 dataset_adult -> datasets_ABAData.html [ SUCCESS ]
REDIRECT:topic	 dataset_5_stages -> datasets_ABAData.html [ SUCCESS ]
REDIRECT:topic	 dataset_dev_effect -> datasets_ABAData.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ABAData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ABAData' as ABAData_1.21.0.zip
* DONE (ABAData)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'ABAData' successfully unpacked and MD5 sums checked

Tests output


Example timings

ABAData.Rcheck/examples_i386/ABAData-Ex.timings

nameusersystemelapsed
ABAData-package8.850.038.87
datasets_ABAData10.67 0.1210.80

ABAData.Rcheck/examples_x64/ABAData-Ex.timings

nameusersystemelapsed
ABAData-package6.860.046.91
datasets_ABAData8.170.228.39