############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/systemPipeR_1.26.3.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.26.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.26.3.zip && rm systemPipeR_1.26.3.tar.gz systemPipeR_1.26.3.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 97 1652k 97 1615k 0 0 2700k 0 --:--:-- --:--:-- --:--:-- 2700k 100 1652k 100 1652k 0 0 2749k 0 --:--:-- --:--:-- --:--:-- 2748k install for i386 * installing *source* package 'systemPipeR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'systemPipeR' finding HTML links ... done EnvModules-class html GOHyperGAll html INTERSECTset-class html ParamFiles html SPRdata html SYSargs-class html SYSargs2-class html SYSargsList-class html SYSargsList html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/systemPipeR.buildbin-libdir/00LOCK-systemPipeR/00new/systemPipeR/help/SYSargsList.html VENNset-class html add-methods html alignStats html catDB-class html catmap html check.output html clusterRun html config.param html configWF html countRangeset html createParamFiles html evalCode html featureCoverage html featuretypeCounts html filterDEGs html filterVars html genFeatures html getQsubargs html initWF html loadWorkflow html mergeBamByFactor html moduleload html olBarplot html olRanges html output_update html overLapper html plotWF html plotfeatureCoverage html plotfeaturetypeCounts html predORF html preprocessReads html qsubRun html readComp html renderReport html renderWF html returnRPKM html runCommandline html runDiff html runWF html run_DESeq2 html run_edgeR html scaleRanges html seeFastq html subsetWF html symLink2bam html sysargs html systemArgs html systemPipeR-package html targets.as.df html tryCL html tryPath html variantReport html vennPlot html writeTargetsRef html writeTargetsout html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'systemPipeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'systemPipeR' as systemPipeR_1.26.3.zip * DONE (systemPipeR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'systemPipeR' successfully unpacked and MD5 sums checked