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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/seqCAT_1.14.1.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.14.1.zip && rm seqCAT_1.14.1.tar.gz seqCAT_1.14.1.zip
###
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install for i386

* installing *source* package 'seqCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCAT'
    finding HTML links ... done
    calculate_similarity                    html  
    compare_many                            html  
    compare_profiles                        html  
    create_profile                          html  
    create_profiles                         html  
    filter_duplicates                       html  
    filter_variants                         html  
    list_cosmic                             html  
    list_variants                           html  
    plot_heatmap                            html  
    plot_impacts                            html  
    plot_variant_list                       html  
    read_cosmic                             html  
    read_profile                            html  
    read_profiles                           html  
    seqCAT                                  html  
    test_comparison                         html  
    test_profile_1                          html  
    test_profile_2                          html  
    test_profile_3                          html  
    test_similarities                       html  
    test_variant_list                       html  
    write_profile                           html  
    write_profiles                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCAT' as seqCAT_1.14.1.zip
* DONE (seqCAT)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'seqCAT' successfully unpacked and MD5 sums checked