############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data samExploreR ### ############################################################################## ############################################################################## * checking for file ‘samExploreR/DESCRIPTION’ ... OK * preparing ‘samExploreR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Manual.Rnw’ using Sweave Loading required package: ggplot2 Loading required package: Rsubread Loading required package: RNAseqData.HNRNPC.bam.chr14 Loading required package: edgeR Loading required package: limma Warning: Package 'samExploreR' is deprecated and will be removed from Bioconductor version 3.14 Simulated Depth: 80% Number of sub samples: 1 Error: processing vignette 'Manual.Rnw' failed with diagnostics: chunk 5 (label = Run-samExplore) Error in .stop_quietly() : --- failed re-building ‘Manual.Rnw’ SUMMARY: processing the following file failed: ‘Manual.Rnw’ Error: Vignette re-building failed. Execution halted