############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/regioneR_1.24.0.tar.gz && rm -rf regioneR.buildbin-libdir && mkdir regioneR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regioneR.buildbin-libdir regioneR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL regioneR_1.24.0.zip && rm regioneR_1.24.0.tar.gz regioneR_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 10 1006k 10 101k 0 0 524k 0 0:00:01 --:--:-- 0:00:01 524k 100 1006k 100 1006k 0 0 1236k 0 --:--:-- --:--:-- --:--:-- 1236k install for i386 * installing *source* package 'regioneR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'regioneR' finding HTML links ... done characterToBSGenome html finding level-2 HTML links ... done circularRandomizeRegions html commonRegions html createFunctionsList html createRandomRegions html emptyCacheRegioneR html extendRegions html filterChromosomes html getChromosomesByOrganism html getGenome html getGenomeAndMask html getMask html joinRegions html listChrTypes html localZScore html maskFromBSGenome html meanDistance html meanInRegions html mergeRegions html numOverlaps html overlapGraphicalSummary html overlapPermTest html overlapRegions html permTest html plot.localZScoreResults html plot.localZScoreResultsList html plot.permTestResults html plot.permTestResultsList html plotRegions html print.permTestResults html randomizeRegions html recomputePermTest html resampleRegions html splitRegions html subtractRegions html summary.permTestResults html summary.permTestResultsList html toDataframe html toGRanges html uniqueRegions html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'regioneR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'regioneR' as regioneR_1.24.0.zip * DONE (regioneR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'regioneR' successfully unpacked and MD5 sums checked