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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:recount3.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings recount3_1.2.6.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/recount3.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'recount3/DESCRIPTION' ... OK
* this is package 'recount3' version '1.2.6'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'recount3' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
create_rse_manual: no visible global function definition for 'mcols'
create_rse_manual: no visible global function definition for 'mcols<-'
expand_sra_attributes: no visible global function definition for
  'colData<-'
Undefined global functions or variables:
  colData<- mcols mcols<-
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
create_rse            143.61   8.85  208.60
available_projects     25.68   1.58   31.51
compute_read_counts    23.37   2.05   34.83
create_rse_manual      22.52   1.87   37.78
available_samples      20.96   0.17   22.81
expand_sra_attributes  17.81   0.88   23.93
read_counts            11.70   1.31   15.37
read_metadata          11.78   0.27   20.25
transform_counts        8.90   0.61   13.19
compute_scale_factors   6.05   1.01   11.39
is_paired_end           5.47   0.21    9.94
file_retrieve           3.22   0.26    6.23
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
create_rse            137.64   8.11  199.66
available_projects     24.58   0.47   28.80
compute_read_counts    22.95   1.28   33.27
create_rse_manual      20.97   1.72   32.94
available_samples      19.91   0.13   21.73
expand_sra_attributes  17.27   0.78   23.06
read_metadata          12.30   0.31   19.88
read_counts            10.27   1.13   14.02
transform_counts       10.41   0.53   14.59
compute_scale_factors   6.43   0.20   11.00
is_paired_end           6.31   0.18   10.90
file_retrieve           3.95   0.06    6.58
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/recount3.Rcheck/00check.log'
for details.