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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ptairMS.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ptairMS_1.0.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/ptairMS.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ptairMS/DESCRIPTION’ ... OK
* this is package ‘ptairMS’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ptairMS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
detectPeak           77.668  0.276  77.947
alignSamples         15.833  0.327  16.179
annotation           13.157  0.260  13.421
imputeMat            12.867  0.084  12.952
impute               12.655  0.112  12.767
writeEset            12.212  0.124  12.338
getPeakList          10.965  0.076  11.040
defineKnots           9.167  0.732   9.898
plot                  9.812  0.064   9.877
plotTIC               9.776  0.096   9.872
plotRaw               9.443  0.096   9.539
plotFeatures          9.256  0.076   9.333
rmPeakList            8.503  0.072   8.575
plotCalib             8.399  0.068   8.468
resetSampleMetadata   8.295  0.016   8.311
setSampleMetadata     8.228  0.076   8.305
createPtrSet          8.064  0.172   8.254
changeTimeLimits      8.062  0.072   8.140
updatePtrSet          7.904  0.096   8.001
importSampleMetadata  7.850  0.096   7.946
getSampleMetadata     7.824  0.072   7.896
getDirectory          7.652  0.028   7.680
exportSampleMetada    7.597  0.076   7.674
getFileNames          7.620  0.036   7.656
convert_to_mzML       5.933  0.129   6.032
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.13-bioc/meat/ptairMS.Rcheck/00check.log’
for details.