############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/openPrimeR_1.14.0.tar.gz && rm -rf openPrimeR.buildbin-libdir && mkdir openPrimeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=openPrimeR.buildbin-libdir openPrimeR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL openPrimeR_1.14.0.zip && rm openPrimeR_1.14.0.tar.gz openPrimeR_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 15 1773k 15 277k 0 0 1041k 0 0:00:01 --:--:-- 0:00:01 1041k 100 1773k 100 1773k 0 0 1921k 0 --:--:-- --:--:-- --:--:-- 1921k install for i386 * installing *source* package 'openPrimeR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'openPrimeR' finding HTML links ... done AnalysisStats html Data html Input html Output html Plots html PrimerDesign html PrimerEval html Primers-method html Scoring html Settings html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/openPrimeR.buildbin-libdir/00LOCK-openPrimeR/00new/openPrimeR/help/Settings.html Templates-method html TemplatesFunctions html check_cvg_constraints html create_report-Primers-Templates-method html create_report-list-list-method html filterLimits-methods html filters-methods html get_cvg_stats-Primers-method html get_cvg_stats-list-method html openPrimeR-package html plot_constraint-Primers-method html plot_constraint-list-method html plot_constraint_deviation-Primers-method html plot_constraint_deviation-list-method html plot_constraint_fulfillment-Primers-method html plot_constraint_fulfillment-list-method html plot_cvg_constraints-Primers-method html plot_cvg_constraints-list-method html plot_primer_binding_regions-Primers-Templates-method html plot_primer_binding_regions-list-list-method html plot_primer_cvg-Primers-Templates-method html plot_primer_cvg-list-list-method html plot_template_cvg-Primers-Templates-method html plot_template_cvg-list-list-method html runTutorial html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'openPrimeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'openPrimeR' as openPrimeR_1.14.0.zip * DONE (openPrimeR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'openPrimeR' successfully unpacked and MD5 sums checked