############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ontoProc_1.14.0.tar.gz && rm -rf ontoProc.buildbin-libdir && mkdir ontoProc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoProc.buildbin-libdir ontoProc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ontoProc_1.14.0.zip && rm ontoProc_1.14.0.tar.gz ontoProc_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 40.7M 3 1658k 0 0 1842k 0 0:00:22 --:--:-- 0:00:22 1842k 10 40.7M 10 4544k 0 0 2448k 0 0:00:17 0:00:01 0:00:16 2448k 20 40.7M 20 8512k 0 0 2982k 0 0:00:13 0:00:02 0:00:11 2982k 28 40.7M 28 11.5M 0 0 3059k 0 0:00:13 0:00:03 0:00:10 3059k 28 40.7M 28 11.5M 0 0 2430k 0 0:00:17 0:00:04 0:00:13 2430k 28 40.7M 28 11.6M 0 0 2029k 0 0:00:20 0:00:05 0:00:15 2062k 33 40.7M 33 13.6M 0 0 2044k 0 0:00:20 0:00:06 0:00:14 1894k 42 40.7M 42 17.1M 0 0 2241k 0 0:00:18 0:00:07 0:00:11 1818k 52 40.7M 52 21.4M 0 0 2478k 0 0:00:16 0:00:08 0:00:08 2027k 65 40.7M 65 26.6M 0 0 2768k 0 0:00:15 0:00:09 0:00:06 3100k 80 40.7M 80 32.7M 0 0 3089k 0 0:00:13 0:00:10 0:00:03 4335k 97 40.7M 97 39.7M 0 0 3429k 0 0:00:12 0:00:11 0:00:01 5326k 100 40.7M 100 40.7M 0 0 3461k 0 0:00:12 0:00:12 --:--:-- 5743k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : restoring symbolic link as a file copy * installing *source* package 'ontoProc' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ontoProc' finding HTML links ... done CLfeats html PROSYM html TermSet-class html allGOterms html bind_formal_tags html c-TermSet-method html cellTypeToGO html cleanCLOnames html common_classes html connect_classes html ctmarks html cyclicSigset html demoApp html dropStop html fastGrep html findCommonAncestors html finding level-2 HTML links ... done getCellOnto html getLeavesFromTerm html humrna html improveNodes html ldfToTerms html liberalMap html makeSelectInput html make_graphNEL_from_ontology_plot html map2prose html mapOneNaive html minicorpus html nomenCheckup html onto_plot2 html onto_roots html packDesc2019 html recognizedPredicates html secLevGen html selectFromMap html seur3kTab html siblings_TAG html stopWords html subset_descendants html sym2CellOnto html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : restoring symbolic link as a file copy * installing *source* package 'ontoProc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ontoProc' as ontoProc_1.14.0.zip * DONE (ontoProc) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ontoProc' successfully unpacked and MD5 sums checked