############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/microbiomeExplorer_1.2.0.tar.gz && rm -rf microbiomeExplorer.buildbin-libdir && mkdir microbiomeExplorer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiomeExplorer.buildbin-libdir microbiomeExplorer_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL microbiomeExplorer_1.2.0.zip && rm microbiomeExplorer_1.2.0.tar.gz microbiomeExplorer_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 8 1777k 8 159k 0 0 598k 0 0:00:02 --:--:-- 0:00:02 597k 100 1777k 100 1777k 0 0 1879k 0 --:--:-- --:--:-- --:--:-- 1880k install for i386 * installing *source* package 'microbiomeExplorer' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'microbiomeExplorer' finding HTML links ... done abundanceHeatmap html abundanceHeatmapUI html addFeatData html addPhenoData html add_plotly_config html add_plotly_layout html aggFeatures html aggregationTab html aggregationTabUI html alphaDiversity html alphaDiversityUI html avgAbundance html avgAbundanceUI html betaDiversity html betaDiversityUI html betaInput html betaInputUI html buildEmptyPlotlyPlot html buildPlottingDF html calculatePCAs html computeCI_Interval html computeDistMat html corrAnalysis html corrAnalysisUI html corrFeature html corrInput html corrInputUI html corrPhenotype html createHeader html dataInput html dataInputUI html designPairs html diffAnalysis html diffAnalysisUI html diffInput html diffInputUI html diffTable html diffTableUI html extendPhenoData html featAbundance html featAbundanceUI html featureAnalysis html featureAnalysisUI html featureCorr html featureCorrUI html featureInput html featureInputUI html featureTable html featureTableUI html fileUpload html fileUploadUI html filterByPheno html filterMEData html generateReport html getFeatModCode html getFileType html getFilterChoices html getLegendLevel html getPhenoChanges html getPhenoModCode html getWidths html heatmapInput html heatmapInputUI html interAnalysis html interAnalysisUI html intraAnalysis html intraAnalysisUI html intraInput html intraInputUI html longAnalysis html longAnalysisUI html longInput html longInputUI html longResults html longResultsUI html makeQCPlot html normalizeData html parseInteractionName html phenotypeCorr html phenotypeCorrUI html phenotypeTable html phenotypeTableUI html plotAbundance html plotAlpha html plotAvgAbundance html plotBeta html plotHeatmap html plotLongFeature html plotSingleFeature html plotlyHistogram html plotlySampleBarplot html readData html relAbundance html relAbundanceUI html replaceWithUnknown html reportList html reportListUI html reportRow html reportRowUI html rollDownFeatures html runDiffTest html runMicrobiomeExplorer html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'microbiomeExplorer' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'microbiomeExplorer' as microbiomeExplorer_1.2.0.zip * DONE (microbiomeExplorer) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'microbiomeExplorer' successfully unpacked and MD5 sums checked