############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylPipe.buildbin-libdir methylPipe_1.26.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'methylPipe' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_methylPipe.c -o R_init_methylPipe.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binning.c -o binning.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/methylPipe.buildbin-libdir/00LOCK-methylPipe/00new/methylPipe/libs/i386 ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methylPipe' finding HTML links ... done BSdata-class html finding level-2 HTML links ... done BSdataSet-class html BSprepare html GEcollection-class html GElist-class html chiCombP html consolidateDMRs html extractBinGRanges html findDMR html findPMDs html getCpos html getCposDensity html mCsmoothing html mapBSdata2GRanges html meth.call html methstats html methylPipe-package html plotMeth html pool.reads html process.hmc html profileDNAmetBin html splitChrs html tabixdata2GR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'methylPipe' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_methylPipe.c -o R_init_methylPipe.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binning.c -o binning.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'methylPipe' as methylPipe_1.26.0.zip * DONE (methylPipe)