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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:memes.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings memes_1.0.4.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/memes.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'memes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'memes' version '1.0.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'memes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
add_sequence  5.4   0.32    5.72
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
add_sequence 5.93   0.26    6.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/memes_1.0.4.tar.gz && rm -rf memes.buildbin-libdir && mkdir memes.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=memes.buildbin-libdir memes_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL memes_1.0.4.zip && rm memes_1.0.4.tar.gz memes_1.0.4.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 10  889k   10 95877    0     0   470k      0  0:00:01 --:--:--  0:00:01  470k
100  889k  100  889k    0     0  2087k      0 --:--:-- --:--:-- --:--:-- 2087k

install for i386

* installing *source* package 'memes' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'memes'
    finding HTML links ... done
    add_sequence                            html  
    ame_compare_heatmap_methods             html  
    check_meme_install                      html  
    drop_best_match                         html  
    example_ame                             html  
    example_ame_large                       html  
    example_chip_summits                    html  
    example_dreme                           html  
    example_dreme_by_binding                html  
    example_dreme_tomtom                    html  
    example_fimo                            html  
    example_peaks                           html  
    example_rnaseq                          html  
    example_tomtom                          html  
    force_best_match                        html  
    get_sequence                            html  
    has_duplicate_motifs                    html  
    importAme                               html  
    importDremeXML                          html  
    importFimo                              html  
    importMeme                              html  
    importStremeXML                         html  
    importTomTomXML                         html  
    meme_is_installed                       html  
    memes-package                           html  
    nest_tomtom                             html  
    plot_ame_heatmap                        html  
    plot_sequence_heatmap                   html  
    remove_duplicate_motifs                 html  
    runAme                                  html  
    runDreme                                html  
    runFimo                                 html  
    runMeme                                 html  
    runStreme                               html  
    runTomTom                               html  
    update_best_match                       html  
    view_tomtom_hits                        html  
    write_fasta                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'memes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'memes' as memes_1.0.4.zip
* DONE (memes)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'memes' successfully unpacked and MD5 sums checked