############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.8.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'mbkmeans' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o In file included from mini_batch.cpp:3: C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable >, int)': C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)': C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mbkmeans' finding HTML links ... done MbkmeansParam html blocksize html clusterRows html compute_wcss html mbkmeans html mini_batch html predict_mini_batch html predict_mini_batch_r html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'mbkmeans' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o In file included from mini_batch.cpp:3: C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable >, int)': C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)': C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] bool status; ^~~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/mbkmeans.buildbin-libdir/mbkmeans/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'mbkmeans' as mbkmeans_1.8.0.zip * DONE (mbkmeans)