############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL mbkmeans ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘mbkmeans’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I/usr/local/include -fpic -g -O2 -Wall -c mini_batch.cpp -o mini_batch.o In file included from mini_batch.cpp:3: /home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function ‘arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable >, int)’: /home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 850 | bool status; | ^~~~~~ /home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function ‘Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)’: /home/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 1446 | bool status; | ^~~~~~ g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-mbkmeans/00new/mbkmeans/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mbkmeans)