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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings hypeR_1.8.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/hypeR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hypeR/DESCRIPTION' ... OK
* this is package 'hypeR' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'hypeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.dots_multi_plot : <anonymous>: no visible binding for global variable
  'pval'
.dots_multi_plot : <anonymous>: no visible binding for global variable
  'fdr'
.dots_multi_plot : <anonymous>: no visible binding for global variable
  'label'
.dots_multi_plot: no visible global function definition for 'head'
.dots_multi_plot: no visible binding for global variable 'significance'
.dots_multi_plot: no visible binding for global variable 'signature'
.dots_multi_plot: no visible binding for global variable 'label'
.dots_multi_plot: no visible binding for global variable 'size'
.dots_plot: no visible binding for global variable 'pval'
.dots_plot: no visible binding for global variable 'fdr'
.dots_plot: no visible binding for global variable 'significance'
.dots_plot: no visible binding for global variable 'size'
.enrichment_map: no visible binding for global variable 'pval'
.enrichment_map: no visible binding for global variable 'fdr'
.find_members: no visible binding for global variable 'from'
.find_members: no visible binding for global variable 'to'
.hiearchy_map: no visible binding for global variable 'pval'
.hiearchy_map: no visible binding for global variable 'fdr'
.hiearchy_map : <anonymous>: no visible binding for global variable
  'label'
.hyper_enrichment: no visible global function definition for 'is'
.ks_enrichment: no visible global function definition for 'is'
enrichr_available: no visible binding for global variable '.'
ggvenn: no visible binding for global variable 'x'
ggvenn: no visible binding for global variable 'y'
hyp_dots: no visible global function definition for 'is'
hyp_emap: no visible global function definition for 'is'
hyp_hmap: no visible global function definition for 'is'
hyp_show: no visible global function definition for 'is'
hyp_to_excel: no visible global function definition for 'is'
hyp_to_rmd: no visible global function definition for 'is'
hyp_to_rmd : <anonymous>: no visible global function definition for
  'is'
hyp_to_table: no visible global function definition for 'is'
hyp_to_table: no visible global function definition for 'write.table'
hypeR: no visible global function definition for 'is'
hypeR: no visible global function definition for 'packageVersion'
hypeR: no visible global function definition for 'head'
msigdb_available: no visible binding for global variable 'gs_cat'
msigdb_available: no visible binding for global variable 'gs_subcat'
msigdb_download: no visible binding for global variable 'gs_name'
msigdb_download: no visible binding for global variable 'gene_symbol'
msigdb_download: no visible binding for global variable '.'
msigdb_version: no visible global function definition for
  'packageVersion'
rctbl_build: no visible global function definition for 'is'
Undefined global functions or variables:
  . fdr from gene_symbol gs_cat gs_name gs_subcat head is label
  packageVersion pval signature significance size to write.table x y
Consider adding
  importFrom("methods", "is", "signature")
  importFrom("utils", "head", "packageVersion", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'hypeR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: enrichr_available
> ### Title: Get enrichr available genesets
> ### Aliases: enrichr_available
> 
> ### ** Examples
> 
> enrichr_available()
Error in curl::curl_fetch_memory(url, handle = handle) : 
  schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: enrichr_available ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'hypeR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: enrichr_available
> ### Title: Get enrichr available genesets
> ### Aliases: enrichr_available
> 
> ### ** Examples
> 
> enrichr_available()
Error in curl::curl_fetch_memory(url, handle = handle) : 
  schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: enrichr_available ... request_fetch -> request_fetch.write_memory -> <Anonymous>
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
      x
   1. +-hypeR(signature, rgsets_obj, test = "kstest") %>% hyp_dots_tests() test-hyp_dots.R:53:4
   2. \-hypeR:::hyp_dots_tests(.)
   3.   \-testthat::expect_silent(hyp_dots(hyp_obj, title = "title")) test-hyp_dots.R:6:4
  -- Failure (test-hyp_dots.R:53:5): hyp_dots() is working -----------------------
  `hyp_dots(hyp_obj, size = TRUE)` produced warnings.
  Backtrace:
      x
   1. +-hypeR(signature, rgsets_obj, test = "kstest") %>% hyp_dots_tests() test-hyp_dots.R:53:4
   2. \-hypeR:::hyp_dots_tests(.)
   3.   \-testthat::expect_silent(hyp_dots(hyp_obj, size = TRUE)) test-hyp_dots.R:7:4
  
  [ FAIL 36 | WARN 58 | SKIP 0 | PASS 373 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
      x
   1. +-hypeR(signature, rgsets_obj, test = "kstest") %>% hyp_dots_tests() test-hyp_dots.R:53:4
   2. \-hypeR:::hyp_dots_tests(.)
   3.   \-testthat::expect_silent(hyp_dots(hyp_obj, title = "title")) test-hyp_dots.R:6:4
  -- Failure (test-hyp_dots.R:53:5): hyp_dots() is working -----------------------
  `hyp_dots(hyp_obj, size = TRUE)` produced warnings.
  Backtrace:
      x
   1. +-hypeR(signature, rgsets_obj, test = "kstest") %>% hyp_dots_tests() test-hyp_dots.R:53:4
   2. \-hypeR:::hyp_dots_tests(.)
   3.   \-testthat::expect_silent(hyp_dots(hyp_obj, size = TRUE)) test-hyp_dots.R:7:4
  
  [ FAIL 36 | WARN 58 | SKIP 0 | PASS 373 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 ERRORs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/hypeR.Rcheck/00check.log'
for details.