############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/genphen_1.20.0.tar.gz && rm -rf genphen.buildbin-libdir && mkdir genphen.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genphen.buildbin-libdir genphen_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL genphen_1.20.0.zip && rm genphen_1.20.0.tar.gz genphen_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 53630 100 53630 0 0 338k 0 --:--:-- --:--:-- --:--:-- 337k install for i386 * installing *source* package 'genphen' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'genphen' finding HTML links ... done dichotomous.phenotype.saap html genotype.saap html genotype.saap.msa html genotype.snp html genotype.snp.msa html phenotype.saap html phenotype.snp html runDiagnostics html runGenphen html runPhyloBiasCheck html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'genphen' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'genphen' as genphen_1.20.0.zip * DONE (genphen) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'genphen' successfully unpacked and MD5 sums checked