############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/genefu_2.24.2.tar.gz && rm -rf genefu.buildbin-libdir && mkdir genefu.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genefu.buildbin-libdir genefu_2.24.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL genefu_2.24.2.zip && rm genefu_2.24.2.tar.gz genefu_2.24.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 44 4961k 44 2217k 0 0 2693k 0 0:00:01 --:--:-- 0:00:01 2694k 100 4961k 100 4961k 0 0 3286k 0 0:00:01 0:00:01 --:--:-- 3288k install for i386 * installing *source* package 'genefu' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'genefu' finding HTML links ... done bimod html boxplotplus2 html claudinLow html claudinLowData html collapseIDs html compareProtoCor html compute.pairw.cor.meta html compute.pairw.cor.z html compute.proto.cor.meta html cordiff.dep html endoPredict html expos html fuzzy.ttest html gene70 html gene76 html geneid.map html genius html ggi html ihc4 html intrinsic.cluster html intrinsic.cluster.predict html map.datasets html medianCtr html mod1 html mod2 html modelOvcAngiogenic html molecular.subtyping html nkis html npi html oncotypedx html ovcAngiogenic html ovcCrijns html ovcTCGA html ovcYoshihara html overlapSets html pam50 html pik3cags html power.cor html ps.cluster html read.m.file html readArray html rename.duplicate html rescale html rorS html scmgene.robust html scmod1.robust html scmod2.robust html setcolclass.df html sig.endoPredict html sig.gene70 html sig.gene76 html sig.genius html sig.ggi html sig.oncotypedx html sig.pik3cags html sig.score html sig.tamr13 html sigOvcAngiogenic html sigOvcCrijns html sigOvcSpentzos html sigOvcTCGA html sigOvcYoshihara html spearmanCI html ssp2003 html ssp2006 html st.gallen html stab.fs html stab.fs.ranking html strescR html subtype.cluster html subtype.cluster.predict html tamr13 html tbrm html vdxs html weighted.meanvar html write.m.file html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'genefu' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'genefu' as genefu_2.24.2.zip * DONE (genefu) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'genefu' successfully unpacked and MD5 sums checked